Query= MSMg01no195_j23.b1 MSMg01no195_j23.b1 CHROMAT_FILE:
MSMg01no195_j23.b1 PHD_FILE: MSMg01no195_j23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:54 2005
(328 letters)
>mm_chr12_108138146_108138873
Length = 728
Score = 582 bits (301), Expect = e-171
Identities = 318/324 (98%)
Strand = Plus / Minus
Query: 5 gaattctgaggtgctgccgtgttgaccctttcactgccgacatcagtcgcagccaacatt 64
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 528 gaattctgaggtgctggggtgttgaccctttcactgccgacatcagtcgcagccaacatt 469
Query: 65 ttgtgttgtctcccaaatgaaggcctcatttattccctaccccgattctcatgacattaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 468 ttgtgttgtctcccaaatgaaggcctcatttattccctaccccgattctcatgacattaa 409
Query: 125 ggcacaaggaaaaagtcacatccgatactaaacatgtctggattcctagaaagcagttat 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 ggcacaaggaaaaagtcacatccgatactaaacatgtctggattcctagaaagcagttat 349
Query: 185 ttaaaacaggtttaaaggaccatcaggtaaatcaaaataagagttggcgacctcaacaag 244
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 348 ttagaacaggtttaaaggaccatcaggtaaatcaaaataagagttggcgacctcaacaag 289
Query: 245 agcagtaactaatgggggttgtggggcttattgtctttctaaatcatanaaacaggcaca 304
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 288 agcagtagctaatgggggttgtggggcttattgtctttctaaatcatagaaacaggcaca 229
Query: 305 cacatgtaaatgcactcgctcatt 328
||||||||||||||||| ||||||
Sbjct: 228 cacatgtaaatgcactcactcatt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 328
Length of database: 728
Length adjustment: 9
Effective length of query: 319
Effective length of database: 719
Effective search space: 229361
Effective search space used: 229361
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no195_j23.g1 MSMg01no195_j23.g1 CHROMAT_FILE:
MSMg01no195_j23.g1 PHD_FILE: MSMg01no195_j23.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:14:54 2005
(553 letters)
>mm_chr12_108009043_108009995
Length = 953
Score = 940 bits (486), Expect = 0.0
Identities = 529/550 (96%), Gaps = 11/550 (2%)
Strand = Plus / Plus
Query: 4 actgtggcagttacgttgtgctcccgggaagccccaggtagcaccttgcagtgtcatccc 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 actgtggcagttacgttgtgctcccgggaagccccaggtagcaccttgcagtgtcatccc 263
Query: 64 gagagtagctggaagttcgctgggaaggatacttagcaactgctgatggcctgcctccat 123
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagagtagctggaagttggctgggaaggatacttagcaactgctgatggcctgcctccat 323
Query: 124 ctataagatgctttctattcatttctattaatctacgtctataaaagtctcctgcattaa 183
||||||||||||||||| |||||||||||||||||| |||||||||||||| | ||||||
Sbjct: 324 ctataagatgctttctactcatttctattaatctacatctataaaagtctcttccattaa 383
Query: 184 ttatctaacccgcacagcacccttaacagggattcacactaacaaaacatcaccctcgtt 243
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ttatctaacccgcacagcacccttaacagggattcacactaacaaaacatcaccctcgtt 443
Query: 244 tgacagatagcattacagaatgaatgaaatacgacatcgtgttctcctcattgttcatgc 303
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tgacagatagcattacagaatgaatgaaatacgacatcgtgttctcctcattgttcatgc 503
Query: 304 tgactagaattacatccggcccacggggtcacctgcagcagtattcgctgaattaacacc 363
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgactagaattacatctggcccacggggtcacctgcagcagtattcgctgaattaacacc 563
Query: 364 agcgtgggtcaatgaatgggctgaatgggccatagtcaataggaccgtgacaccgtgaag 423
| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 564 aacgtgggtcaatgaatgggctgaatgggccatagtcaataagaccgtgacaccgtgaag 623
Query: 424 agctgatgagtacctgagagcctgattctcacctcctgtggtcatttcttgctgtccccg 483
|||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 624 agctgatgagtacctgagagcctgattctcacctcctgtggtcatttc-----------g 672
Query: 484 atgaggacaggaggtgtgtctaaggccgcactgtgagcagtgcctatagtggcacatttc 543
||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||
Sbjct: 673 atgaggacaggaggtgtgtctaaggccgcactgtgagcagtgcctatagcgtcacatttc 732
Query: 544 tcccatacca 553
||||||||||
Sbjct: 733 tcccatacca 742
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 553
Length of database: 953
Length adjustment: 10
Effective length of query: 543
Effective length of database: 943
Effective search space: 512049
Effective search space used: 512049
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
