MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-196L20
Chromosome	12 (Build37)	12 (Build37)
Map Location	84,611,341 - 84,611,647	84,191,946 - 84,192,134
singlet/doublet	singlet	singlet
Overlap gene	Dpf3
Upstream gene	EG666911, Rgs6
Downstream gene	Wdr21, Zfyve1, LOC626950, Rbm25, Psen1, Papln, Numb, LOC100042325, 2410016O06Rik, Acot2, Acot1, Acot4, Acot3, Acot5, LOC666963, Acot6, Dnalc1, Pnma1, C130039O16Rik, EG432676
Link	Open Mouse BAC browser

Click to get alignment info.

name	EG666911 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:666911 MGI:3648202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 5 Proteins pseudo : _no_value

name	Rgs6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:50779 MGI:1354730
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dpf3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70127 MGI:1917377
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Wdr21 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73828 MGI:1921078
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zfyve1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217695 MGI:3026685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC626950 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:626950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 563 ESTs, 42 Proteins pseudo : _no_value

name	Rbm25 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67039 MGI:1914289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Psen1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19164 MGI:1202717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Papln (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:170721 MGI:2386139
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Numb (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18222 MGI:107423
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042325 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042325
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 Proteins pseudo : _no_value

name	2410016O06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:71952 MGI:1919202
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acot2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171210 MGI:2159605
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acot1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:26897 MGI:1349396
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acot4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171282 MGI:2159621
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acot3 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:171281 MGI:2159619
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Acot5 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217698 MGI:2384969
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC666963 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:666963
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	Acot6 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:217700 MGI:1921287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Dnalc1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:105000 MGI:1921462
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Pnma1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:70481 MGI:2180564
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	C130039O16Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:238317 MGI:2685106
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 35 ESTs, 2 Proteins

name	EG432676 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:432676 MGI:3643291
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 367 ESTs, 7 Proteins

name	Rgs6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802314 GeneID:50779 MGI:1354730
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : regulator of G-protein signaling 6 transcript_id : NM_015812.2

name	Dpf3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:17158030 GeneID:70127 MGI:1917377
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : D4, zinc and double PHD fingers, family 3 transcript_id : NM_058212.1

name	Wdr21 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:21313611 GeneID:73828 MGI:1921078
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : WD repeat domain 21 transcript_id : NM_030246.1

name	Zfyve1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142348122 GeneID:217695 MGI:3026685
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger, FYVE domain containing 1 transcript_id : NM_183154.3

name	Rbm25 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:124430761 GeneID:67039 MGI:1914289
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs product : RNA binding motif protein 25 transcript_id : NM_025930.3

name	Psen1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130584 GeneID:19164 MGI:1202717
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : presenilin 1 transcript_id : NM_008943.2

name	Papln (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:18700029 GeneID:170721 MGI:2386139
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : papilin, proteoglycan-like sulfated glycoprotein transcript_id : NM_130887.1

name	Numb (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6754911 GeneID:18222 MGI:107423
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : numb gene homolog (Drosophila) transcript_id : NM_010949.1

name	2410016O06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142369353 GeneID:71952 MGI:1919202
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 2410016O06 gene transcript_id : NM_023633.2

name	Acot2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:40538845 GeneID:171210 MGI:2159605
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA thioesterase 2 transcript_id : NM_134188.2

name	Acot1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129966 GeneID:26897 MGI:1349396
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA thioesterase 1 transcript_id : NM_012006.2

name	Acot4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31543518 GeneID:171282 MGI:2159621
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA thioesterase 4 transcript_id : NM_134247.2

name	Acot3 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118129952 GeneID:171281 MGI:2159619
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA thioesterase 3 transcript_id : NM_134246.3

name	Acot5 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:46195804 GeneID:217698 MGI:2384969
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA thioesterase 5 transcript_id : NM_145444.2

name	Acot6 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:110626166 GeneID:217700 MGI:1921287
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : acyl-CoA thioesterase 6 transcript_id : NM_172580.1

name	Dnalc1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142371894 GeneID:105000 MGI:1921462
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : dynein, axonemal, light chain 1 transcript_id : NM_028821.2

name	Pnma1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142349591 GeneID:70481 MGI:2180564
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : paraneoplastic antigen MA1 transcript_id : NM_027438.2

name	C130039O16Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149263333 GeneID:238317 MGI:2685106
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 35 ESTs, 2 Proteins product : RIKEN cDNA C130039O16 gene transcript_id : XM_001477247.1

name	EG432676 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94393004 GeneID:432676 MGI:3643291
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 367 ESTs, 7 Proteins product : predicted gene, EG432676 transcript_id : XM_484160.4

name	Rgs6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29789076 GeneID:50779 MGI:1354730
definition	GO_component : GO:0005834 - heterotrimeric G-protein complex [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence TAS]; GO:0004871 - signal transducer activity [Evidence IEA] GO_process : GO:0007186 - G-protein coupled receptor protein signaling pathway [Evidence TAS]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0009968 - negative regulation of signal transduction [Evidence IEA] codon_start : 1 product : regulator of G-protein signaling 6 protein_id : NP_056627.1

name	Dpf3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:17158031 GeneID:70127 MGI:1917377
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005634 - nucleus [Evidence IEA] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : cerebellum D4 product : D4, zinc and double PHD fingers, family 3 protein_id : NP_478119.1

name	Wdr21 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313612 CCDS:CCDS26027.1 GeneID:73828 MGI:1921078
definition	codon_start : 1 product : WD repeat domain 21 protein_id : NP_084522.1

name	Zfyve1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110625853 CCDS:CCDS26028.1 GeneID:217695 MGI:3026685
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence ISS]; GO:0005795 - Golgi stack [Evidence ISS]; GO:0048471 - perinuclear region [Evidence ISS] GO_function : GO:0046872 - metal ion binding [Evidence IEA]; GO:0005545 - phosphatidylinositol binding [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence ISS] [Evidence IEA] GO_process : GO:0016192 - vesicle-mediated transport [Evidence ISS] codon_start : 1 product : zinc finger, FYVE domain containing 1 protein_id : NP_898977.2

name	Rbm25 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:124430762 GeneID:67039 MGI:1914289
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0006397 - mRNA processing [Evidence IEA] codon_start : 1 product : RNA binding motif protein 25 protein_id : NP_080206.3

name	Psen1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679493 CCDS:CCDS26030.1 GeneID:19164 MGI:1202717
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0043025 - cell soma [Evidence IDA]; GO:0035253 - ciliary rootlet [Evidence IDA]; GO:0031410 - cytoplasmic vesicle [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005783 - endoplasmic reticulum [Evidence ISS] [Evidence IDA]; GO:0005794 - Golgi apparatus [Evidence ISS] [Evidence IDA]; GO:0005639 - integral to nuclear inner membrane [Evidence ISS]; GO:0005887 - integral to plasma membrane [Evidence ISS]; GO:0005622 - intracellular [Evidence IDA]; GO:0000776 - kinetochore [Evidence ISS]; GO:0016020 - membrane [Evidence IDA]; GO:0005624 - membrane fraction [Evidence ISS] [Evidence IDA]; GO:0005739 - mitochondrion [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0004175 - endopeptidase activity [Evidence IMP]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI] GO_process : GO:0042987 - amyloid precursor protein catabolism [Evidence IMP] [Evidence ISS]; GO:0042640 - anagen [Evidence IGI]; GO:0006916 - anti-apoptosis [Evidence ISS]; GO:0006915 - apoptosis [Evidence IDA]; GO:0001568 - blood vessel development [Evidence IMP]; GO:0006874 - calcium ion homeostasis [Evidence IMP]; GO:0007155 - cell adhesion [Evidence IEA]; GO:0001708 - cell fate specification [Evidence IGI]; GO:0007001 - chromosome organization and biogenesis (sensu Eukaryota) [Evidence ISS]; GO:0007059 - chromosome segregation [Evidence ISS]; GO:0030326 - embryonic limb morphogenesis [Evidence IGI]; GO:0007507 - heart development [Evidence IMP]; GO:0007242 - intracellular signaling cascade [Evidence IEA]; GO:0006509 - membrane protein ectodomain proteolysis [Evidence ISS]; GO:0007613 - memory [Evidence IMP]; GO:0001764 - neuron migration [Evidence IMP]; GO:0007220 - Notch receptor processing [Evidence IMP] [Evidence ISS]; GO:0007219 - Notch signaling pathway [Evidence IEA]; GO:0043065 - positive regulation of apoptosis [Evidence IGI]; GO:0043085 - positive regulation of enzyme activity [Evidence ISS]; GO:0045860 - positive regulation of protein kinase activity [Evidence IDA]; GO:0051604 - protein maturation [Evidence IGI]; GO:0016485 - protein processing [Evidence ISS]; GO:0051605 - proteolysis during protein maturation [Evidence IMP]; GO:0051563 - smooth endoplasmic reticulum calcium ion homeostasis [Evidence IGI] codon_start : 1 note : presenilin-1 product : presenilin 1 protein_id : NP_032969.1

name	Papln (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:18700030 CCDS:CCDS26031.1 GeneID:170721 MGI:2386139
definition	GO_component : GO:0031012 - extracellular matrix [Evidence IEA] GO_function : GO:0004222 - metalloendopeptidase activity [Evidence IEA]; GO:0008233 - peptidase activity [Evidence IEA]; GO:0005515 - protein binding [Evidence IEA]; GO:0004867 - serine-type endopeptidase inhibitor activity [Evidence IEA] GO_process : GO:0007155 - cell adhesion [Evidence IEA] codon_start : 1 exception : mismatches in translation product : papilin protein_id : NP_570957.1

name	Numb (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754912 CCDS:CCDS26032.1 GeneID:18222 MGI:107423
definition	GO_component : GO:0045177 - apical part of cell [Evidence IDA]; GO:0005737 - cytoplasm [Evidence IDA]; GO:0005769 - early endosome [Evidence IDA]; GO:0019897 - extrinsic to plasma membrane [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005515 - protein binding [Evidence IPI] GO_process : GO:0007409 - axonogenesis [Evidence IDA] [Evidence IMP]; GO:0007275 - development [Evidence IEA]; GO:0030900 - forebrain development [Evidence IMP]; GO:0007399 - nervous system development [Evidence IMP]; GO:0007405 - neuroblast proliferation [Evidence IGI] codon_start : 1 product : numb gene homolog protein_id : NP_035079.1

name	2410016O06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:12963763 CCDS:CCDS26033.1 GeneID:71952 MGI:1919202
definition	GO_component : GO:0030685 - nucleolar preribosome [Evidence ISS]; GO:0005730 - nucleolus [Evidence IDA] GO_function : GO:0003723 - RNA binding [Evidence ISS] GO_process : GO:0006338 - chromatin remodeling [Evidence TAS]; GO:0042254 - ribosome biogenesis and assembly [Evidence TAS] codon_start : 1 exception : mismatches in translation product : RIKEN cDNA 2410016O06 protein_id : NP_076122.1

name	Acot2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:40538846 CCDS:CCDS26034.1 GeneID:171210 MGI:2159605
definition	GO_component : GO:0005739 - mitochondrion [Evidence TAS] [Evidence IDA] GO_function : GO:0016291 - acyl-CoA thioesterase activity [Evidence TAS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016290 - palmitoyl-CoA hydrolase activity [Evidence IEA]; GO:0004759 - serine esterase activity [Evidence IEA] GO_process : GO:0006637 - acyl-CoA metabolism [Evidence TAS]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : mitochondrial acyl-CoA thioesterase 1 protein_id : NP_598949.2

name	Acot1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6753550 GeneID:26897 MGI:1349396
definition	GO_component : GO:0005737 - cytoplasm [Evidence TAS] GO_function : GO:0016291 - acyl-CoA thioesterase activity [Evidence TAS]; GO:0016292 - acyl-CoA thioesterase I activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016290 - palmitoyl-CoA hydrolase activity [Evidence IEA]; GO:0004759 - serine esterase activity [Evidence IEA] GO_process : GO:0006637 - acyl-CoA metabolism [Evidence TAS]; GO:0006629 - lipid metabolism [Evidence IEA]; GO:0001676 - long-chain fatty acid metabolism [Evidence IDA] codon_start : 1 note : acyl-CoA thioesterase 1, cytosolic product : cytosolic acyl-CoA thioesterase 1 protein_id : NP_036136.1

name	Acot4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31543519 CCDS:CCDS26035.1 GeneID:171282 MGI:2159621
definition	GO_component : GO:0005777 - peroxisome [Evidence TAS] GO_function : GO:0016291 - acyl-CoA thioesterase activity [Evidence TAS]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016290 - palmitoyl-CoA hydrolase activity [Evidence IEA]; GO:0004759 - serine esterase activity [Evidence IEA] GO_process : GO:0006637 - acyl-CoA metabolism [Evidence TAS]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : peroxisomal acyl-CoA thioesterase 2B protein_id : NP_599008.2

name	Acot3 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527406 CCDS:CCDS26036.1 GeneID:171281 MGI:2159619
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005777 - peroxisome [Evidence TAS] [Evidence IDA] GO_function : GO:0016291 - acyl-CoA thioesterase activity [Evidence TAS] [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016290 - palmitoyl-CoA hydrolase activity [Evidence IEA]; GO:0004759 - serine esterase activity [Evidence IEA] GO_process : GO:0006637 - acyl-CoA metabolism [Evidence IDA] [Evidence TAS]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 product : peroxisomal acyl-CoA thioesterase 2A protein_id : NP_599007.1

name	Acot5 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46195805 CCDS:CCDS26037.1 GeneID:217698 MGI:2384969
definition	GO_component : GO:0005829 - cytosol [Evidence IDA]; GO:0005777 - peroxisome [Evidence IDA] GO_function : GO:0016291 - acyl-CoA thioesterase activity [Evidence IDA]; GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016290 - palmitoyl-CoA hydrolase activity [Evidence IEA]; GO:0004759 - serine esterase activity [Evidence IEA] GO_process : GO:0006637 - acyl-CoA metabolism [Evidence IDA]; GO:0006629 - lipid metabolism [Evidence IEA] codon_start : 1 exception : mismatches in translation product : acyl-CoA thioesterase 5 protein_id : NP_663419.2

name	Acot6 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:110626167 CCDS:CCDS26038.1 GeneID:217700 MGI:1921287
definition	EC_number : 3.1.2.2 GO_function : GO:0016787 - hydrolase activity [Evidence IEA]; GO:0016290 - palmitoyl-CoA hydrolase activity [Evidence IEA] codon_start : 1 product : acyl-CoA thioesterase 6 protein_id : NP_766168.1

name	Dnalc1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:55742877 CCDS:CCDS26039.1 GeneID:105000 MGI:1921462
definition	GO_function : GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 exception : mismatches in translation product : axonemal dynein light chain 1 protein_id : NP_083097.1

name	Pnma1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:58037211 CCDS:CCDS26040.1 GeneID:70481 MGI:2180564
definition	GO_component : GO:0005634 - nucleus [Evidence IEA] codon_start : 1 exception : mismatches in translation product : paraneoplastic antigen MA1 protein_id : NP_081714.1

name	C130039O16Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149263334 GeneID:238317 MGI:2685106
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001477297.1

name	EG432676 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:51766932 GeneID:432676 MGI:3643291
definition	codon_start : 1 product : hypothetical protein protein_id : XP_484160.1

name	LOC100042325 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042325
definition	number : 1 pseudo : _no_value

name	LOC666963 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666963
definition	number : 3 pseudo : _no_value

name	LOC666963 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666963
definition	number : 2 pseudo : _no_value

name	LOC666963 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:666963
definition	number : 1 pseudo : _no_value

name	EG666911 (CDS detail)
type	misc_RNA
link	vega ensembl MGI NCBI
xref	GI:94392998 GeneID:666911 MGI:3648202
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 ESTs, 5 Proteins product : predicted gene, EG666911 pseudo : _no_value transcript_id : XR_001940.1

name	LOC626950 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149263348 GeneID:626950
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 563 ESTs, 42 Proteins product : similar to histone H2A.F pseudo : _no_value transcript_id : XR_033615.1

clone name	MSMg01-469L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-457I21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-511G22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079N18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-513A20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507M02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-441G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-431A19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-054P09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-435G13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-097P08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-325F24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-110J24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-180A21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351L24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-340D17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-544O08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-358A04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141F02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-459A22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-129D22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-351J24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-419J08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-059G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-303L13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-397P24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-391A07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-196L20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-060B21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-288G07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-524J13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-103J17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-412F01
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-545B05
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-059G03
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-458G06
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-464N09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-449E11
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-303L13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-196L20
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-096N06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-524J13
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-391A07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-435O20
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-397P24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-336P06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-363P07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-288G07
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-337I04
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-106D16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-510F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-442L16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-469J06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-088A15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-103E09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-312B01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-216H05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-215O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449J23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-522O03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-449C21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-318N09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367E02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-291O23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-297I19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-290F04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-303C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-231L09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404D01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-260D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-102K24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-433P02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-162L19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429P12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-080E22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-333D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-293O04
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-534A14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-075I12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-129B15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-544L05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-450G22
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-442E01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-184M14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-492O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-355P11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-351P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-098C22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-279I24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-193P14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-367B05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456E15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-347F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-255O12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-279K03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-078L16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-020O19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-145B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-209E18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-125C14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-323G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-175E06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-104A18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-123A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-276D02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-078P18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039G09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-120F18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-173L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096D01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-024B01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-132J13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-302B20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-262H22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-249O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-135F09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-340L04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-026O14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-071E06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-311B10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-345M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-190M18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069H10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-243A03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-187K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-171H05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-163L11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-022D17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-233N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-231B16
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-296B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149M09
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-022B24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-010O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149M04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248H17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068B11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235P11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232L22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-012G05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-220H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188B06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334M01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292P19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-321A11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-341G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085J01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-263A07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-330O18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-144H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-003C22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148P08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-254P19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-326H23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-180B03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-112I09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-152C02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-247K24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-128K20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-312O03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-330F15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-283L05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-122I03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-154N17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-266L15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-186G04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-098E19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-338K23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161D14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-013N17
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-196L20.T7 (MSMg01no196_l20.b1)	MSMg01-196L20.TJ (MSMg01no196_l20.g1)
ACC	AG384740	AG384741
length	749	688
length of high quality (start - end)	311 (57 - 367)	189 (106 - 294)
definition	CHROMAT_FILE: MSMg01no196_l20.b1 PHD_FILE: MSMg01no196_l20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:23 2005	CHROMAT_FILE: MSMg01no196_l20.g1 PHD_FILE: MSMg01no196_l20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:23 2005
singlet/doublet	singlet	singlet
BLAST hit	plural	unique
Map location.	(84,611,341 - 84,611,647)	(84,191,946 - 84,192,134)
sequence	TTTCTCCATTTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXCGCGGAATTCTTGTCCTTTCTCAGCTGACAGTGCAGTTGAGGTG TCTGACGTGAAGTCAGCCTGGGATGCCAGCCGTCCTTTTGTGTTCCTCTC AGGGGCTTCGCAGCTGAACTGGTGATGGGCAGTCATTTGAGGGGGATCTT AGGGAGGGCCTGGACAACCGGCTCTACATGGAAATAAGTAGCCCAGCAAG ATTTGGTGGGACCATGAGATGCAGAGAAGGCATATCTCCCAATGTCATGG CTGTCTGAGGGGCCGTGGTCAGTGAGGGCAGGGCACCCCAGCCCTCAGGA GCTAAGGCCCAGTAATGTTATTACATTCCCNTGCCCTCCTTCCTGCACCA CCAGGGGCCTCTGTGTGGGCTGAACTGGATCAAAAAAGAAAAAACTGTTC CCGAGGGTGTTCCAAGATTAGTCACTGCCAGGTGGTGAGGACCTGAATCC CTGCTTCCTGGGGACTTTATCAGATACATGGTGCATTATGGTCCATAGGA GCCTTTTGGGGACAGTACACTCCAGCGCCGTATGAATATAAGTATCTAGG TAGATCACATTTTTCCTATCTTTTTGTGATTATAACCGCGGTTTAGTGTT TTTTCTTTCTTTTCCCCCTTCTCTCTCTTTTTCACTCTTCTTTATACTTT TCCCCAAACATTTTTCTTTCTATCTCCTTTCCTTTTTCCTCTCTTTTTG	TGGCGGCCGCNCTTCGGTAGCGGGGTAGGNGACACNATAGATGGCTCCAC AAAATTCATCTGGGAGNTCATCAGAAGGCAGGGAGTAAGGGTTGTTTGGG CATAGTGAGTGGGAGCTAAATCCTTGTCTACGATTAATCTATCAAGAACG GTTATAAAAGCTTATGCTTCAGAAACATAGAGTCAAACTTGTCTGAGAGC GGCTCATATACAGGAAGAATCAAAAGATGTTTGTCAGATGCTTCTGTGAG AAAAGTTGGGGGAAACAGCCATTGCTCTCCACCTGCCCCAAATGATAACT AGTATTGCGNGACAGGCAGNTAGNTAGGNTCATTGTTTTTTTTCCCCCCC CCCCCCATTTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTAAAAAA AAAAAAAAAAATTTGGGGGGGGGGGGTGGGTTTTTTTATATGGTATATAT AATGTTATTATTGTGTGTTTTTTTGTTTTTTGTGGAGGAAAAATGAGGAT GGTTTTGGAGTATTAATTTTTAAAGAAGAAGGAGGAATATAGATAAATGA GTGTTGATAATATTAATTTTTATATTAGATTTATAATTATAATAAGGTTA TTTGATAATAATTAATGAAAAAGAGAAGGAAGGGGAATTTTTTTTTTTTT TTTTTGTGAAGAGAGAGTAATTATTGTTATTTTGGCAN
quality values	Open. Hide. 7 7 7 7 8 8 8 7 9 9 10 21 22 23 17 11 10 13 12 24 30 37 37 30 28 28 28 30 30 30 33 37 37 44 48 48 31 25 23 23 23 35 44 57 57 53 53 53 50 50 50 37 37 23 29 29 40 43 68 68 40 40 40 40 43 43 57 57 57 57 57 59 59 68 68 50 48 46 46 46 48 57 57 57 57 57 57 57 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 48 48 48 48 48 50 68 68 68 57 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 68 68 68 68 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 59 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 59 59 57 57 57 44 34 30 15 13 12 15 12 12 13 15 28 34 47 59 57 57 57 57 57 46 46 46 43 43 50 50 50 57 59 59 59 59 47 43 39 39 41 34 18 15 8 6 7 6 6 6 6 6 6 6 9 12 16 12 3 0 3 6 6 7 6 7 7 11 11 11 15 27 27 37 35 35 35 37 37 37 37 47 47 59 59 48 48 48 57 57 57 48 48 48 59 47 47 40 40 37 37 30 30 28 30 18 15 11 10 10 10 11 11 12 8 8 8 8 9 10 16 23 21 24 28 24 19 13 13 15 15 12 18 16 23 9 11 11 12 18 23 21 28 30 37 37 34 22 16 10 10 10 19 23 33 30 30 33 28 32 30 28 31 30 30 42 41 32 36 32 32 39 39 32 28 20 17 17 22 21 28 24 24 12 12 12 15 16 22 17 20 20 24 32 24 30 17 12 10 17 10 10 10 10 10 10 18 14 15 10 8 8 8 18 15 26 26 19 10 9 9 8 8 8 8 10 10 10 10 15 10 12 18 17 14 13 9 9 13 16 21 14 17 15 16 16 10 10 10 10 10 8 8 8 8 10 11 11 11 13 18 18 10 10 10 15 13 11 11 8 8 6 6 12 8 15 12 15 12 11 10 10 11 21 19 13 13 8 8 10 8 9 11 10 8 8 8 8 9 9 9 9 14 9 9 8 8 8 6 8 6 6 8 8 9 8 8 10 10 8 8 9 9 8 10 8 10 8 8 8 12 13 17 16 12 8 8 8 8 12 8 9 11 11 13 10 10 8 10 10 8 8 8 9 9 11 11 13 10 10 8 6 6 8 10 8 6 6 8 8 8 10 7 6 8 8 10 10 12 13 16 11 9 11 8 8 8 8 8 8 8 13 17 8 10 8 8 8 8 9 9 10 8 8 8 8 8 13 8 8 8 8 17 7 7 6 6 8 12 10 10 10 9 11 10 10 9 9	Open. Hide. 39 39 39 39 41 41 39 25 10 3 0 3 6 7 6 6 6 6 6 6 6 6 9 14 12 12 9 12 3 0 3 17 19 21 3 0 3 13 9 9 9 9 9 9 9 9 9 10 9 10 9 10 12 15 13 18 19 27 33 33 59 59 44 25 25 3 0 3 23 23 33 33 33 33 33 48 48 47 53 53 38 36 53 50 50 50 59 59 47 39 25 25 9 9 9 19 9 9 9 6 6 6 6 6 8 18 21 34 34 37 39 43 47 48 59 59 59 53 53 53 53 53 53 59 59 57 57 57 57 57 53 53 68 68 68 68 68 68 68 68 68 68 54 54 54 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 57 57 57 50 48 48 57 57 47 47 47 47 37 44 59 59 37 23 25 10 10 8 8 8 8 9 11 12 22 28 39 41 47 59 59 59 59 59 59 59 59 59 59 59 57 57 57 57 57 57 59 59 57 57 53 68 68 57 57 57 59 59 59 59 59 59 59 59 59 59 59 59 57 57 53 53 59 59 50 50 47 47 27 27 11 9 9 6 6 6 6 6 7 10 9 9 9 27 9 9 3 0 3 9 9 9 23 23 27 27 3 0 3 29 3 0 3 27 27 3 0 3 11 8 6 6 6 6 9 11 22 22 11 15 8 9 9 9 14 15 29 29 31 22 16 13 11 10 10 12 17 28 34 59 59 59 59 48 48 48 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 47 40 37 32 17 14 12 8 10 9 11 14 13 22 19 19 14 11 8 8 10 8 8 8 6 6 6 7 15 10 21 15 20 29 27 17 9 9 9 9 9 11 9 9 9 10 10 13 8 10 10 10 13 8 7 6 6 8 8 10 8 8 8 8 8 8 8 8 8 8 8 8 10 8 8 8 6 6 7 8 8 8 9 9 11 11 10 8 8 8 8 9 9 9 9 9 9 8 8 8 8 10 10 8 8 12 8 8 8 12 8 8 6 6 6 8 9 9 7 6 6 8 8 8 8 11 10 10 8 8 8 8 8 8 8 10 10 8 8 8 12 10 8 8 8 8 8 8 8 8 8 8 8 6 6 8 8 8 8 8 8 7 7 8 8 8 8 8 8 8 8 8 8 8 10 9 8 8 7 7 9 9 10 10 12 11 9 9 7 7 8 8 10 8 8 9 8 8 8 8 10 11 10 10 8 8 8 8 8 11 6 6 6 6 6 6 8 8 10 8 8 6 6 8 8 8 8 8 8 8 9 9 8 10 8 8 8 8 10 9 10 9 9 10 11 11 12 11 11 8 8 10 12 18 19 26 21 21 22 23 22 23 23 22 20 20 12 8 6 6 6 6 6 8 8 8 9 8 8 8 6 8 6 6 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no196_l20.b1 MSMg01no196_l20.b1 CHROMAT_FILE:
MSMg01no196_l20.b1 PHD_FILE: MSMg01no196_l20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:23 2005
         (311 letters)



>mm_chr12_84611137_84611847
          Length = 711

 Score =  563 bits (291), Expect = e-165
 Identities = 303/307 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcttgtcctttctcagctgacagtgcagttgaggtgtctgacgtgaagtcagcctg 64
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 511 gaattcttgtcctttctcagctgacagtgcagtggaggtgtctgacgtgaagtcagcctg 452

                                                                       
Query: 65  ggatgccagccgtccttttgtgttcctctcaggggcttcgcagctgaactggtgatgggc 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 ggatgccagccgtccttttgtgttcctctcaggggcttcgcagctgaactggtgatgggc 392

                                                                       
Query: 125 agtcatttgagggggatcttagggagggcctggacaaccggctctacatggaaataagta 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 391 agtcatttgagggggatcttagggagggcctggacaaccggctctacgtggaaataagta 332

                                                                       
Query: 185 gcccagcaagatttggtgggaccatgagatgcagagaaggcatatctcccaatgtcatgg 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 331 gcccagcaagatttggtgggaccatgagatgcagagaaggcatatctcccaatgtcacgg 272

                                                                       
Query: 245 ctgtctgaggggccgtggtcagtgagggcagggcaccccagccctcaggagctaaggccc 304
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 271 ctgtctgaggggccgtggtcagtgagggcagggcaccccagccctcaggaactaaggccc 212

                  
Query: 305 agtaatg 311
           |||||||
Sbjct: 211 agtaatg 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 311
Length of database: 711
Length adjustment: 9
Effective length of query: 302
Effective length of database: 702
Effective search space:   212004
Effective search space used:   212004
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no196_l20.g1 MSMg01no196_l20.g1 CHROMAT_FILE:
MSMg01no196_l20.g1 PHD_FILE: MSMg01no196_l20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:23 2005
         (189 letters)



>mm_chr12_84191746_84192334
          Length = 589

 Score =  335 bits (173), Expect = 1e-96
 Identities = 185/189 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgagtgggagctaaatccttgtctacgattaatctatcaagaacggttataaaagcttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgagtgggagctaaatccttgtctacgattaatctatcaagaacggttataaaagcttat 260

                                                                       
Query: 61  gcttcagaaacatagagtcaaacttgtctgagagcggctcatatacaggaagaatcaaaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gcttcagaaacatagagtcaaacttgtctgagagcggctcatatacaggaagaatcaaaa 320

                                                                       
Query: 121 gatgtttgtcagatgcttctgtgagaaaagttgggggaaacagccattgctctccacctg 180
            |||  || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tatggatggcagatgcttctgtgagaaaagttgggggaaacagccattgctctccacctg 380

                    
Query: 181 ccccaaatg 189
           |||||||||
Sbjct: 381 ccccaaatg 389


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 589
Length adjustment: 8
Effective length of query: 181
Effective length of database: 581
Effective search space:   105161
Effective search space used:   105161
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information