BAC Information

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BAC

Clone NameMSMg01-197B14
Chromosome12 (Build37)
Map Location 37,277,129 - 37,277,485
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043575, LOC629758, LOC100043579, LOC669866, Agr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
Downstream geneMeox2, A530016O06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197B14.T7 (MSMg01no197_b14.b1)MSMg01-197B14.TJ (MSMg01no197_b14.g1)
ACCAG384965AG384966
length730825
length of high quality
(start - end)
357 (374 - 730)475 (130 - 604)
definitionCHROMAT_FILE: MSMg01no197_b14.b1 PHD_FILE: MSMg01no197_b14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:51 2005CHROMAT_FILE: MSMg01no197_b14.g1 PHD_FILE: MSMg01no197_b14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:16:51 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTCTCATGTACAGAGTCGCATAGATACCTCTTTACACTTCACAGCGT
AAGTACGCAAAGCATGATGGCTATTGGAATGTTATATTAAGGTTGCTGGA
TTCAGCTGGTAAAAGTCACAGGTATTAAGTTATATTCAAACTGCATAAAA
GCGATTTATACTGCATGTGTGTCCCATGTCATATTTGGGATGTACTTACT
ACCAAACACTGTTTGTGGTTTAGGAATTATAAATACCCAAGGTACCCAAT
ATTTTACCTAGCAGCTCCACTCTCTGCTGACAATAGCCGGCAATGCATTG
GAGCCATGTATTTCTGAAGCCTCCAGGAACTGGATATGCACTTTGTTTCT
TCCATTTCGAGCTTTACCCTAAATAAATTTTATTTCACATTTGCACCCTG
TGGTGTTAGCCTTCATCCATGATGCTCCATGTTATGAACATGGAAAATGG
TTTATTTATAATTCCTATCATATTTGTGTACTATAACCAAAAACTACAGT
ATGTTGAGGAGGAAATGTTCCTGACCCAGACCTGAGTTCTTACTCTGCCA
GTTCTCCGTCTTTGAGCAAAATTATGTGTCTCTTTCGGCCTGGGATGGTT
TGCCTTTCATAGCCTCTACAGTTTCAACATCTTAGGTTTCCAGGATCCCA
TGTAAACTAAAATGTGTCACCAAAAGGTCA
GTTTTTTTTTTTTTTTTTTCCCCTTTTCCCNNACCCTCCTCTATTNNNNN
ACACCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXAACTGTGAAACATCTGACTTC
AGAGAGATTATGAGCCCCATGAATATAGATGTCTTAGTCAGGGTTTCTAC
TGCTGTGATAAAAACACCATGGCAAAAGAAAAGGAAAACAAAACAAACAA
ACAAAACCAAACAAAAATAAAAAACTGGAGCAGACAAAGTTTATTTCACT
TTACAGGCTGTAGTGCATTATCCAGGAAAGTCAGGATAGGAACTCATGTC
AGGTACCTGGAGGCAGAAACAGATGTAGAAGCTATGGTGGAGTGTTGATT
ACTGGCTGGTTCAGCTTGATTTCTTATGCCATCCAGGACCATCCACCCAG
GGGTAGCACTACTTCCTGTGCCACGGGCCCACCTACATTGATCATCAGTC
AAGAAAATGTACCACAGGTTTGTCCACTGGCCAATCTGGTGGGACATTTT
CTCAACTGTGGTTTCCTCTGTGAAAATGACTATAGCCTGTGTCAAGTTGA
CATAAAAGTAGCCATTAAACTGATATGGTATCTTTTTTATTCTTAGCGTC
CTGTCTAATATTTTATGAATATCACATATATATCTGTTTTAAAGAATATG
CTGTGAAAGGGTGTCCGACCTTGAAAATACATAGTGTTTGTATGTGAATG
TGTGACGTGCATTTCTTTCCTTTATATATCACTCTATTTTATATCACTTT
ATATTATATCTTTCTATCCTATATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_b14.b1 MSMg01no197_b14.b1 CHROMAT_FILE:
MSMg01no197_b14.b1 PHD_FILE: MSMg01no197_b14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:16:51 2005
         (357 letters)



>mm_chr12_37276929_37277685
          Length = 757

 Score =  661 bits (342), Expect = 0.0
 Identities = 354/358 (98%), Gaps = 2/358 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggaactggatatgcactttgtttcttccatttcgagctttaccctaaataaattttat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 557 caggaactggatatgcactttgtttcttccatttcgagctttaccctaaataaattttat 498

                                                                       
Query: 61  ttcacatttgcaccctgtggtgttagccttcatccatgatgctccatgttatgaacatgg 120
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 497 ttcacatttgcaccctgtggtgttagccttcatccatgatgctacatgttatgaacatgg 438

                                                                       
Query: 121 aaaatggtttatttataattcctatcatatttgtgtactataaccaaaaactacagtatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 aaaatggtttatttataattcctatcatatttgtgtactataaccaaaaactacagtatg 378

                                                                       
Query: 181 ttgaggaggaaatgttcctgacccagacctgagttcttactctgccagttctccgtcttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 ttgaggaggaaatgttcctgacccagacctgagttcttactctgccagttctccgtcttt 318

                                                                       
Query: 241 gagcaa-aattatgtgtctctttcggcctgggatggtttgcctttcatagcctctacagt 299
           |||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 gagcaagaa-tatgtgtctctttcggcctgggatggtttgcctttcatagcctctacagt 259

                                                                     
Query: 300 ttcaacatcttaggtttccaggatcccatgtaaactaaaatgtgtcaccaaaaggtca 357
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 258 ttcaacatcttaggtttccaggatcccatgtaaacgaaaatgtgtcaccaaaaggtca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 357
Length of database: 757
Length adjustment: 9
Effective length of query: 348
Effective length of database: 748
Effective search space:   260304
Effective search space used:   260304
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)