BAC Information

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BAC

Clone NameMSMg01-197K04
Chromosome12 (Build37)
Map Location 92,099,663 - 92,099,958
singlet/doubletsinglet
Overlap genenone
Upstream geneNrxn3, LOC100039498, LOC100039287, Dio2
Downstream geneLOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-197K04.T7 (MSMg01no197_k04.b1)MSMg01-197K04.TJ (MSMg01no197_k04.g1)
ACCAG385278AG385279
length758738
length of high quality
(start - end)
296 (73 - 368)231 (125 - 355)
definitionCHROMAT_FILE: MSMg01no197_k04.b1 PHD_FILE: MSMg01no197_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:35 2005CHROMAT_FILE: MSMg01no197_k04.g1 PHD_FILE: MSMg01no197_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:17:35 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTTTGGATTACCTTAGGAAAGCTGTGTATTTGATAGAAGATGTC
AGAAATGATACAAATGGTGAAATGCCACTTTTTCTTTGTGTGTTCATCTC
TCCCTTTCTTTCAGATGGCTGGCTACCCCAGCTTCTCTTCAGTGTTTCCT
TAATGACCTATGGCATCATAGAACACAATTCTTCCATACATTTTTACACA
GAGTTGGGACTTCAGATAACTGTGTGTGGCCCTAGAGTTAAGCACCCCAA
ATAAAACAAATTCCTTAAGGGATGATGCTTCAATATGATACTTAAAAATG
AAAACAAATATAAACACTCTAATGAATACCATGTCCAAAAAAAGAGAATA
ACTTTTAATTCTTGATTTTCCCCCTCTGGATCAGACTTCAGTGTTTCCTG
GCATTACACTGAATAATACATGTATAACTTCAAAATTTCCAGCAATACAT
GAATAATAATAGTGGTCAGCGCTGACATACATATGTGCTTACTACTATCA
GTATTTTGAGTAATGCAACTTATGTATTATAACGCCCGCCACTCCGCTTA
TCACTAACTTGAATGCCCGCACATTTCCCAAATCCAGTGCTTACATCCAT
TGCAAATTTTCTTAGCTAGGTTAACCTGTTGCCAAGTGTTTTCGGATCCC
GCACTCTTATAGCTTTTTCTACCCATTGCTTCACCTAGGTTTTATTTAAG
GCATAATT
CCGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTTGTTTGTCTCTGAGCCCCATTTTT
AATGGGGTTATTTGTATTTCCCGGAGTCCACCTTCTTGAGTTCTTTATAT
ATATTGGATATTAGTCCTCTATCTGATTTAAGATTGGTAAAGATTCTTTC
CCAATCTGTTGGTGGCCTTTTTGTCTTATTGAAGGTGTCTTTTGCCTTAC
AGAAACTTTGTAATTTTATGAAGTCCCATTTAGAGAAAGTACCCAAGGAG
CTAAAGGAGTCTGCAACCTTATAGGTGGAACAACAATATGAACTAACCAG
TACCCCTTTATTCTCTTGTCTCTAGCTGCATATGTATCAGAAGATGGCCT
AGCCGGCCATCATCCCCCAAGAGAGGACCCTTGGTCTTGCAAACTTTATA
TGCCTCAGTACGGGGGAATGCCAGGGCCAAGAAGCGTCAGCGCTTGTATT
AGTATTATCCCCCCCTACCCCACTTCTCTTTTTCTTTTATCCTTATACAA
TTTTTTCTATCCTGCCTCTTCCCTTCACATCTTTTCCTTTTTTTTTTTTC
TTTCGATATACCCCCCACTTTTTTCTTTTCTTCTTCTTCCTTCCCCCCCC
CTCCTTTTTTTTCCCCTCCTTTTTTTCCCCTTCCCTCCACATTAACACCA
TTACTTCTTTCCCACATCCAGCTACCCCTTTTTCTTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no197_k04.b1 MSMg01no197_k04.b1 CHROMAT_FILE:
MSMg01no197_k04.b1 PHD_FILE: MSMg01no197_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:17:35 2005
         (296 letters)



>mm_chr12_92099463_92100158
          Length = 696

 Score =  534 bits (276), Expect = e-156
 Identities = 291/296 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaagctgtgtatttgatagaagatgtcagaaatgatacaaatggtgaaatgccactttt 60
           |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||
Sbjct: 496 gaaagctgtgtatttgatagaagatgtcagaaatgatacaaatgatgaaatggcactttt 437

                                                                       
Query: 61  tctttgtgtgttcatctctccctttctttcagatggctggctaccccagcttctcttcag 120
           ||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct: 436 tctttgtgtgttcatctctccctttctttcaaatggctggctaccccggcttctcttcag 377

                                                                       
Query: 121 tgtttccttaatgacctatggcatcatagaacacaattcttccatacatttttacacaga 180
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 376 tgtttccttaatgacctatggcatcatagaacacaattcttccctacatttttacacaga 317

                                                                       
Query: 181 gttgggacttcagataactgtgtgtggccctagagttaagcaccccaaataaaacaaatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 gttgggacttcagataactgtgtgtggccctagagttaagcaccccaaataaaacaaatt 257

                                                                   
Query: 241 ccttaagggatgatgcttcaatatgatacttaaaaatgaaaacaaatataaacact 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 ccttaagggatgatgcttcaatatgatacttaaaaatgaaaacaaatataaacact 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)