BAC Information

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BAC

Clone NameMSMg01-198O04
Chromosome12 (Build37)
Map Location 96,989,875 - 97,129,206
singlet/doubletdoublet
Overlap geneLOC667688, Flrt2
Upstream geneLOC217786, LOC100039603
Downstream gene1700019M22Rik, LOC100039664
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-198O04.T7 (MSMg01no198_o04.b1)MSMg01-198O04.TJ (MSMg01no198_o04.g1)
ACCAG386031AG386032
length760798
length of high quality
(start - end)
319 (45 - 363)289 (73 - 361)
definitionCHROMAT_FILE: MSMg01no198_o04.b1 PHD_FILE: MSMg01no198_o04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:15 2005CHROMAT_FILE: MSMg01no198_o04.g1 PHD_FILE: MSMg01no198_o04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:19:15 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(97,128,891 - 97,129,206)(96,989,875 - 96,990,162)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTCTTCATATCCTTGCTTTGCAGGCAAGCACATTAAGTGTCTTGT
TGAAGGGTACGCTGCAACCAATACGTCACTTAGGAAATTGATCCAAGAAA
TTCTCATTTCCGATCCTTTGTTCCGGTACCTTAGCAAAACTGTTTTCCAA
AGATAGAAACATATTGCTCTGAAGCTAAACAGCAAATTAAAGACATGCTG
TCTCATGTAATCTTATAAATATGGTTTAAAAGCCACCAGTACCCCTGAGA
GAGTTGCCATCTGGTTCCCATGGTCAAAAAAGAAATGAGCCAAGCATGGG
AGGAAAACAGCCTTCTATTGTCTGGCCAAATTTCTACATTGCTTAGGCTT
CCAAAAATCAAATTTCCACAACGTATTTGAGAAGGTGAAGCTAACTCTTC
CTGAGTCCCTTGTGAAAATGACCAGATTTGACCCGGAGATTATAAAGGTG
GGATATTCCTTAATAAAACATGATTAGCAGATCAAGTTTTATAAGTGTTG
AGTGTTGAGAGTTTCCTTCTTGTAGTAGCAGATCTTCAGTATGTCAGCCA
GCACTAAGCCTTAATTCCATGGCCTTGTGACATGCAACCCCACATTCAAT
CTAGACTGATTCCTATTCACACTTTACTACTATTCACTTCTGTGTCCTGA
AGACTTTTCCTTTTATATGAATTCTGTTTACTATGTTTGGAAGATACTTC
CTGTTAAGAT
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTGCCTTTCTTCCTGTACAGTAGTATATA
GTGTTCTGGGGAGTTCTTATGTCCCAAGTCAGGTAACCTGTTAGTTCCAT
GAATGTGAGGCTTTTTAAAATATGCATTCTAATATATGCCCAGATTACAT
GTGTGTTTTATATGTGATGTTCAGATCAGTGGGTGTATGCGAAATGTAGA
AAATATTTGTTCCAGTACTATATATTGTTTTATTTCAAATATAGGTATAA
GTAATATTTACTTCTTTTCTTATTATAGTAGGTTACTTTGTTTCTTTAAG
GGCAAACATGTTTCGATCCTTGCCCCCCCCCACATATGTAGCAGAGAATG
GCCTTGTCGGACATCAATGGGAGGAGAAAAAAAAGAATCTGTGAAGGCTC
GATGCCCCAGTGTTAGAGAATGCCAGGCCAGGAAAGCAGGAGTGGGTGTG
TGGGTAGGACATAATTATTTATTAATTCCTCTCCCTTTGTTATTGTTATG
GTTTTTCTCTATCTCTCCACTTTTACTATTTATTCTTCTTCCCTTTCATA
CTAATCTTTTTCTTCTCATTATCACCTTCCATTCATACTCTTTCTCTCCA
TATTCCCATCTTCTGTTCTCCCCTCTATATTTCATCCCCCTTCATCATCC
TTCCTTTTCTTATCTTCCTACCTCCTCACACTCTTCTCCCCCCTTCCCTT
TCCTCCTCTTTCTCTCCCCCTCATTATCCTCTCCTCCTCCACTCGCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no198_o04.b1 MSMg01no198_o04.b1 CHROMAT_FILE:
MSMg01no198_o04.b1 PHD_FILE: MSMg01no198_o04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:15 2005
         (319 letters)



>mm_chr12_97128688_97129406
          Length = 719

 Score =  603 bits (312), Expect = e-177
 Identities = 315/316 (99%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcagtcttcatatccttgctttgcaggcaagcacattaagtgtcttgttgaaggg 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 ggaattcagtcttcatatccttgctttgcaggcaagcacattaagtgtcttgttgaaggg 460

                                                                       
Query: 64  tacgctgcaaccaatacgtcacttaggaaattgatccaagaaattctcatttccgatcct 123
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tacgctgcaaccaataagtcacttaggaaattgatccaagaaattctcatttccgatcct 400

                                                                       
Query: 124 ttgttccggtaccttagcaaaactgttttccaaagatagaaacatattgctctgaagcta 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 399 ttgttccggtaccttagcaaaactgttttccaaagatagaaacatattgctctgaagcta 340

                                                                       
Query: 184 aacagcaaattaaagacatgctgtctcatgtaatcttataaatatggtttaaaagccacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 339 aacagcaaattaaagacatgctgtctcatgtaatcttataaatatggtttaaaagccacc 280

                                                                       
Query: 244 agtacccctgagagagttgccatctggttcccatggtcaaaaaagaaatgagccaagcat 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 agtacccctgagagagttgccatctggttcccatggtcaaaaaagaaatgagccaagcat 220

                           
Query: 304 gggaggaaaacagcct 319
           ||||||||||||||||
Sbjct: 219 gggaggaaaacagcct 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no198_o04.g1 MSMg01no198_o04.g1 CHROMAT_FILE:
MSMg01no198_o04.g1 PHD_FILE: MSMg01no198_o04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:19:15 2005
         (289 letters)



>mm_chr12_96989675_96990363
          Length = 689

 Score =  526 bits (272), Expect = e-154
 Identities = 284/288 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgcctttcttcctgtacagtagtatatagtgttctggggagttcttatgtcccaagtcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||
Sbjct: 201 tgcctttcttcctgtacagtagtatatagtgttctggggagttcttatgtgaaaagtcag 260

                                                                       
Query: 61  gtaacctgttagttccatgaatgtgaggctttttaaaatatgcattctaatatatgccca 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 gtaacctgttagttccatgaatgtgaggctttttaaaatatgcattctaatatacgccca 320

                                                                       
Query: 121 gattacatgtgtgttttatatgtgatgttcagatcagtgggtgtatgcgaaatgtagaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gattacatgtgtgttttatatgtgatgttcagatcagtgggtgtatgcgaaatgtagaaa 380

                                                                       
Query: 181 atatttgttccagtactatatattgttttatttcaaatataggtataagtaatatttact 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 atatttgttccagtactatatattgttttatttcaaatataggtataagtaatatttact 440

                                                           
Query: 241 tcttttcttattatagtaggttactttgtttctttaagggcaaacatg 288
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcttttcttattatagtaggttactttgtttctttaagggcaaacatg 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)