Query= MSMg01no201_o09.b1 MSMg01no201_o09.b1 CHROMAT_FILE:
MSMg01no201_o09.b1 PHD_FILE: MSMg01no201_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:28 2005
(623 letters)
>mm_chr12_77107780_77108802
Length = 1023
Score = 975 bits (504), Expect = 0.0
Identities = 578/604 (95%), Gaps = 7/604 (1%)
Strand = Plus / Plus
Query: 22 ctctataaacaaggcttgtttccacctcacagagacccacctgcctctgcctcgcacgta 81
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||
Sbjct: 225 ctctgtaaacaaggcttgcttccacctcacagagacccacctgcctctgcctcgcaagtg 284
Query: 82 ctgggactgagcccacgtgtgccactacacttggcagatacacattttctttagccattc 141
|| |||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 ct---actgagggcacgtgtgccactacacttggcagatacacattttctttagccattc 341
Query: 142 atctactgactgacacaaaggttgattc-tatgacctgttgttgtgaatgatgctgcggt 200
|||||||||||||||| |||||||| || | |||||||||||||||||||||||||||||
Sbjct: 342 atctactgactgacactaaggttgaatcct-tgacctgttgttgtgaatgatgctgcggt 400
Query: 201 gagcactagagtacagacaactcttctacaagttaacctttagg-cgtgtggcctgtggt 259
|||||||||| ||||||| ||||||||||||| |||||||| || | |||||||||||||
Sbjct: 401 gagcactagaatacagacgactcttctacaagctaaccttt-ggacatgtggcctgtggt 459
Query: 260 ggaattgtggaagcatgtggtgttatagtttagttttttgagatgcctctgtgctgttct 319
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 460 ggaattgtggaagcatgtggtgttatagtttagttttttgagatgcctctgtgctgttct 519
Query: 320 ccatttgtaatcccgaacagtacccatgagtctattcctccacatcctttccagcgctag 379
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 520 ccatttgtaatcccgaacagtacccatgagtctattcctccacatcctttccagcgctag 579
Query: 380 gcattttccagctctttgactaaaagccattatgagagatgtgatgtctattagactttc 439
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 580 gaattttccagctctttgactaaaagccattatgagagatgtgatgtctgttagactttc 639
Query: 440 tcattcatatgtattcatttattcgtcattttgcagcactgtgggtttagccccagatta 499
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 640 tcattcatatgtattcatttattcatcattttgcagcactgtggatttagccccagatta 699
Query: 500 acctctcacgtgttagataagaactcaaatcactgagccaaagccttggtttaacttgtc 559
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 700 acctctcacgtgctagataagaactcaaatcactgagccaaagccttggtttaacttgtc 759
Query: 560 ttcccgcagttagtggacttgagcagtttttttttcttacacctaacagacttatttttg 619
||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||
Sbjct: 760 ttcccgcagttagtggacttgagcaatttttttttcttacacccaacagacttatttttg 819
Query: 620 aaat 623
||||
Sbjct: 820 aaat 823
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 623
Length of database: 1023
Length adjustment: 10
Effective length of query: 613
Effective length of database: 1013
Effective search space: 620969
Effective search space used: 620969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no201_o09.g1 MSMg01no201_o09.g1 CHROMAT_FILE:
MSMg01no201_o09.g1 PHD_FILE: MSMg01no201_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:28 2005
(352 letters)
>mm_chr12_77162137_77162889
Length = 753
Score = 669 bits (346), Expect = 0.0
Identities = 351/353 (99%), Gaps = 1/353 (0%)
Strand = Plus / Minus
Query: 1 aaagaaccgccactgngtcaccagcctgctgatgtcacacttcctctgccgaacaccccg 60
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 553 aaagaaccgccactgtgtcaccagcctgctgatgtcacacttcctctgccgaacaccccg 494
Query: 61 ggcggccctctgccattggtctgacagcttggagaattcagagacaaattctggtctagg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 493 ggcggccctctgccattggtctgacagcttggagaattcagagacaaattctggtctagg 434
Query: 121 ggaaaaccattggcgagagattcataacacaaacatgtacaaaaaggcactggccaggac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 433 ggaaaaccattggcgagagattcataacacaaacatgtacaaaaaggcactggccaggac 374
Query: 181 tgacggacgtttgcacgcacaacatacacgaaacaaacaacttcatgaaacctgagcctg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 tgacggacgtttgcacgcacaacatacacgaaacaaacaacttcatgaaacctgagcctg 314
Query: 241 aaacagtgaggggtacagagct-gggggtgcatggtttagaaggtacgcacacacaacct 299
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 313 aaacagtgaggggtacagagctggggggtgcatggtttagaaggtacgcacacacaacct 254
Query: 300 ggcattgggccagcattcccagggagcatgcctgggaagcattcctttaaaag 352
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 ggcattgggccagcattcccagggagcatgcctgggaagcattcctttaaaag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 352
Length of database: 753
Length adjustment: 9
Effective length of query: 343
Effective length of database: 744
Effective search space: 255192
Effective search space used: 255192
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
