BAC Information

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BAC

Clone NameMSMg01-202C06
Chromosome12 (Build37)
Map Location 118,048,755 - 118,048,988
singlet/doubletsinglet
Overlap genePtprn2
Upstream geneIgh, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, LOC627375
Downstream geneLOC432713, LOC100042461, Rapgef5, A930023M06Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-202C06.T7 (MSMg01no202_c06.b1)MSMg01-202C06.TJ (MSMg01no202_c06.g1)
ACCAG387412AG387413
length798783
length of high quality
(start - end)
---234 (187 - 420)
definitionCHROMAT_FILE: MSMg01no202_c06.b1 PHD_FILE: MSMg01no202_c06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:50 2005CHROMAT_FILE: MSMg01no202_c06.g1 PHD_FILE: MSMg01no202_c06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:22:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
GCTTTTCTGATTTAGGATTCAAACACCCTTTCTATCGTTAAAGNTAACTC
AATAATTTGGGCGCTAATAGAGTACTATTCGGGACGCGGGCGGAANCNAG
TCTTACACCAGGAAGGNNCANNNAANNNNNNNCAACAAACNAAAAAGAGT
TTTATCCCGGCCAAAAAAANGAGNNCGGGGAGCNAGGCAAAACAAGAANA
ANCAGAATGGCACTGAACTCGGAGGNGCAAGGANCANCAAGCCCAGAACC
GTTACATATTTTTCTGACACAATTCCAGCTCTGATTCCTTTGAGATTCTT
AAATTGTATGTCTGAACTTTGACAGCTCTAATATTTCACAGGAATTTTTT
TTTTTGGCAAGCACGAATGAGAGAACGAAAGGATGTATTTTTGTATGCAC
GCACCCCAAATTTATTAACATATTTATAAGTTAGTTTTATTTTTGCCCAA
CAAAAAAAAAAAATTTAAAGTTTAGGTGTTGAAATTTTTTTTTTAAAACT
TAAATGAACGTTATTATGTTTTACTTTTAAAAATTTTTATTTTATTAATA
AGCAACAATCTTATTTGATGAGTATTATATAAATATTATATTTAAGTCTT
AAAATGTTTATTATAGCCATCTTTATTTATATATTGCCAGTTTATAAGTA
TTATTTAATAATATATAAAAATTTCAAAGAAAAAGAAAAGAGGGAATAAG
TAAAGAAAATTTATTTTTTTCTGTATAGAATATGTTTGAATAAGTTCCCG
AAGAGCAGATAAGTATAAAAATGATAATAGAATGGATAAAGTTTATAG
CTTCTTTCCTCTCCCTTCTTTCTCCCCCCCACCACACACACACCCTTCNC
CTTTTTTTTCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGTAGCAGTTGATC
AGCATGAGGAGGTGTTAAGGGACTGACTTCTGACATAGGTGACTACAAAA
GCAGAGAAAAGAGTAAGAGACAGTATTCTACCCAGAGGCTGAATATCATG
TCTGGAAGTGCTGGACCTTATGGGATTCACTGCGGGCAATGGAAGCCTTT
GGAGCAATTCAGTGATAATACAACTGCACCTAGGAAGATGAAGCCATAGT
TTAGATGTGAAAGTCCTCCAAAGGCTTAAATGCTAAAGATTTGGTCCCCA
GGGTGGCACTAATGAGCTATTTTTTTTTATCCCCACCCCCGACCACTTAT
GGAAAGCACATGACTCCTCAGAGGCCTGCCCCTGAAGGGAATAAAAGCTC
CTTTTCTCCACTACCTTTTATTCTTGCCATGAAGTGAGCAGTTTTCTCTG
TCACATGTTCTGGTCATTTCCATCTGGTATTATCAAAAGCCTATTAGAAA
CTGGTCCAACCAATCATGGACTGGAACCTTAAAACTATGAGCCAAAGTAA
ACATTTTGAATTTGTGACTTCATTATTTTGAGCGTTATTCCTATAATAAT
TAAATGCTCTCTTACCACTAATAATTATGTTTGTGTTGAAGTCTTTTTGA
TTTTATCTTGACCTGAATTTGTTTTGAAATAAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no202_c06.g1 MSMg01no202_c06.g1 CHROMAT_FILE:
MSMg01no202_c06.g1 PHD_FILE: MSMg01no202_c06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:22:50 2005
         (234 letters)



>mm_chr12_118048629_118049262
          Length = 634

 Score =  453 bits (234), Expect = e-132
 Identities = 234/234 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   aggtgactacaaaagcagagaaaagagtaagagacagtattctacccagaggctgaatat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 360 aggtgactacaaaagcagagaaaagagtaagagacagtattctacccagaggctgaatat 301

                                                                       
Query: 61  catgtctggaagtgctggaccttatgggattcactgcgggcaatggaagcctttggagca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 300 catgtctggaagtgctggaccttatgggattcactgcgggcaatggaagcctttggagca 241

                                                                       
Query: 121 attcagtgataatacaactgcacctaggaagatgaagccatagtttagatgtgaaagtcc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 240 attcagtgataatacaactgcacctaggaagatgaagccatagtttagatgtgaaagtcc 181

                                                                 
Query: 181 tccaaaggcttaaatgctaaagatttggtccccagggtggcactaatgagctat 234
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 180 tccaaaggcttaaatgctaaagatttggtccccagggtggcactaatgagctat 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 234
Length of database: 634
Length adjustment: 9
Effective length of query: 225
Effective length of database: 625
Effective search space:   140625
Effective search space used:   140625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)