CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCTTTTTTGGACTTGCTAGACATTGACAGAAATACAATTCTAAGCTTT
TGAATGGGGAGGTCAATATTACCGTACAGACTGTAAAAGAAGTCCTAGGT
GTTAAAAAAAAGCCTAAGCAAGTTTTATGGGTGCTGAAATAATTATAATC
ACCACCATTAATTATTAATTCTGGACTAGACCTGATTTCAAGGATCTGAG
AACATTATCTTCACTCCATATAGTAACGGCAGGGAGTGAAAAAAATGCAG
GGTGGACAAAGCAACTGATTTATTTTAAAAGCCACATGATTAGGGACTTG
TCAAACCTGAAATCTAAGTGATTTTACATGCTACCACGTTCAGTATGTAA
AAAAAACGTAGGCCCCACATGAAGTTTTGCTATATAAGCTATACTGAGAT
AAAGTTATGAAATAACAGGTTTAATTTAAGGCAGTAGCGTAACTTATGCT
TAACTTGTTCTAGTCAGTAGAAGACTGAGTTAGTTACATCATGTTCAAGA
ATGTTTTGTCCCTCTGCTGATGAGGGCTCCTTTTCAACTAAAAGCTGGTG
GATTCCTACCGTTCTTTTGTACATTTTACTCTCCCATCTCAATGTTTTAT
TTAAATTAATCTACCTGTTATTTATAAAATTTTATGCACTATTATATCAA
AAAGGGATAAATGAAGTTGATTTGCATACAAAGAACAATGCCCACTAAN

CCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXGTCCAGACTCCAAGACACGGTAAGCA
GGAGTGGGTGGGTTGGTGAACACCCCCCATGATGGATGCGATCCCCCCCC
TCTTTCCCTTCTCTCTCTTCCCTTTTCCCTCCTCTCCTCCCCCTCCTTTC
CCCTCCCCCCTCCTCCCCTTCCCTCTCCCCTCCCCTCTTCCTCCCTCCCT
CCTCCCTCCTTCTCCCCCCCCCCCCTTCTTTCCTTCCCCCCCTCTTTCCC
CCCCCTCCTCCCCCTCCTCCTCTCCCCTCTCTTTTTTCCCCCCCTCCCCC
CCCCCCCCTTTCCCCCCTTCTTCTTTCCTCCCCCCCCTCCCTCCCCTCCC
CCCTTCCCTCCCCCCCTTCCTTCCCCTTTTCCCCCCCCCCCCCCCCTCTC
CTTCTCCTCCCTCTTCTTTCCCTCCCCCCCCTTCCCTCCCCCCCTCCCTC
CCCCTTGTCCCCTTCCTCTTCCTCTTCCCCTTTTTTCTTTCCTCTCCTCC
CTCCCCTCCTTCCCCTTCCCCTTCCTCTCCCCTCCCTCCCTTCTCTTTTT
CCCCTCCCCTCCTTTTCCCCATCCCCCCCCCTCCCCTTCCTTCCCTCTTT
TCCCCCTCTCTTTTCCTTCCCTTTCTCCCCCCCCCCCCCCCCTTCTTCCT
CCCCCCCCCTCTTCCCCTTCTCCCCCTTCCCCTTTTCCCCCTCCCTCCCT
TTTTTTTCCCCTCCCCCCCTTTTTCTCCTCCTCTCTTTCCTCTTCCCTTC
CCTCCTTTTCCCCCCCCTCCCTCG

Query= MSMg01no205_a20.b1 MSMg01no205_a20.b1 CHROMAT_FILE:
MSMg01no205_a20.b1 PHD_FILE: MSMg01no205_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:49 2005
         (705 letters)



>mm_chr12_46777937_46779038
          Length = 1102

 Score = 1149 bits (594), Expect = 0.0
 Identities = 673/700 (96%), Gaps = 3/700 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcttttttggacttgctagacattgacagaaatacaattctaagcttttgaatggg 64
           ||||||||||||||| ||||||||||||||||||||||||||||| || |||||||||||
Sbjct: 205 gaattcttttttggagttgctagacattgacagaaatacaattctgagattttgaatggg 264

                                                                       
Query: 65  gaggtcaatattaccgtacagactgtaaaagaagtcctaggtgttaaaaaaaagcctaag 124
           |||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaggtcaatatta-ggtacagactgtaaaagaagtcctaggtgttaaaaaaaagcctaag 323

                                                                       
Query: 125 caagttttatgggtgctgaaataattataatcaccaccattaattattaattctggacta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 324 caagttttatgggtgctgaaataattataatcaccaccattaattattaattctggaata 383

                                                                       
Query: 185 gacctgatttcaaggatctgagaacattatcttcactccatatagtaacggcagggagtg 244
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 gacctgattttaaggatctgagaacattatcttcactccatatagtaacggcagggagtg 443

                                                                       
Query: 245 aaaaaaatgcagggtggacaaagcaactgatttattttaaaagccacatgattagggact 304
           ||||||  |||||||||||||||||||||||||||||||||||||||||| ||||| |||
Sbjct: 444 aaaaaacggcagggtggacaaagcaactgatttattttaaaagccacatggttaggaact 503

                                                                       
Query: 305 tgtcaaacctgaaatctaagtgattttacatgctaccacgttcagtatgtaaaaaaaacg 364
           ||||||| |||||||||||||| ||||||||||||||| |||||||||||  ||||||||
Sbjct: 504 tgtcaaatctgaaatctaagtggttttacatgctaccaagttcagtatgt--aaaaaacg 561

                                                                       
Query: 365 taggccccacatgaagttttgctatataagctatactgagataaagttatgaaataacag 424
           ||||   || |||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 562 taggtttcatatgaagttttgctatataagctctactgagataaagttatgaaataacag 621

                                                                       
Query: 425 gtttaatttaaggcagtagcgtaacttatgcttaacttgttctagtcagtagaagactga 484
           ||||||||||||| |||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct: 622 gtttaatttaaggtagtagcataacttatgcttaacttgttctagtcagtggaagactga 681

                                                                       
Query: 485 gttagttacatcatgttcaagaatgttttgtccctctgctgatgagggctccttttcaac 544
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 682 gttagttacatcatgttcaagaatgttgtgtccctctgctgatgagggctccttttcaac 741

                                                                       
Query: 545 taaaagctggtggattcctaccgttcttttgtacattttactctcccatctcaatgtttt 604
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 742 taaaagctggtgaattcctaccgttcttttgtacattttactctcccatctcaatgtttt 801

                                                                       
Query: 605 atttaaattaatctacctgttatttataaaattttatgcactattatatcaaaaagggat 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 802 atttaaattaatctacctgttatttataaaattttatgcactattatatcaaaaagggat 861

                                                   
Query: 665 aaatgaagttgatttgcatacaaagaacaatgcccactaa 704
           |||||||||||||||||||||||||||||||||| |||||
Sbjct: 862 aaatgaagttgatttgcatacaaagaacaatgcctactaa 901


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 705
Length of database: 1102
Length adjustment: 10
Effective length of query: 695
Effective length of database: 1092
Effective search space:   758940
Effective search space used:   758940
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)