BAC Information

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BAC

Clone NameMSMg01-205C19
Chromosome12 (Build37)
Map Location 59,989,751 - 59,990,064
singlet/doubletsinglet
Overlap genenone
Upstream geneSstr1, Clec14a
Downstream geneLOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33, LOC665628, LOC238199, LOC665639, LOC665644
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-205C19.T7 (MSMg01no205_c19.b1)MSMg01-205C19.TJ (MSMg01no205_c19.g1)
ACCAG389259AG389260
length724875
length of high quality
(start - end)
318 (45 - 362)---
definitionCHROMAT_FILE: MSMg01no205_c19.b1 PHD_FILE: MSMg01no205_c19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:59 2005CHROMAT_FILE: MSMg01no205_c19.g1 PHD_FILE: MSMg01no205_c19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:26:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCAGTGGATTTTTAAAAGAGCACATATATGTAGCTGGGAAGGAAAATG
GTGGGGAGTATATAGGAGGAGCTGCAAAGGATAAAATAATGGTGCATTTG
ATTAAAACACAGTATTACAATCCCAAACAATAAACTTTTTTAAAATTCGT
GTCTAATTGTTAATTGAATATTTGTATTGACTAACCCTCTGTGATAGTTT
AAATATGCTCAGCCCACAGGAAGTGGCACCATTAGAGGATGTGGCCTTGT
TGGAGAAAATGAGTCACTGTGAACATGTGCTTTGAGGTCCTATGCTCAGG
CACTGCCCAGTGATTTTTATACCCCCCACCCCCCTGCCTATGAAAAAGGG
ACTCCTCCTGGCTGCCCCCCCCCCAAGATATAAAACTCTCAGCTCCTCCA
GCACCACGCCTGCATGCTGCCAGGTTTCCCACCATGACGATCATGAATTG
AACCTCTAAAACTCTAAGCCAGCCCCAATTAAATGTTGTCTCTATAAGAG
TTGACTTGGTCATGGTGTCTTTTCAGAGCAATAANACCCAAACTAAGATG
CTCTCATAAGTATACAATTTACTCCCTGAATTTCCAGCTACCATGTGATT
CTCTTCCATTTCTAGCAGCACGTGTCACTCTATCACTACTTGAATCTTTC
TAGTGGATTACTTCCTTTAAATTG
NATTTCTTTTGTGGGTTGTTNACNACTTAATAAAAATCTATTCATCCCCC
CNNCAACGAAGACTAAGAGTAGGACTGGAGGACGCCTGGTTTGTCAAATT
CACCCGAAXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGATGAAACCGAA
TGACAGAGAAATCCTGAAAAAATTGTTCAACCCCCTTAATCATCAGGGAA
ATGCAAATCAAAACAACACTGAGATTCCACTTCACTCAAATCAGAATGGT
TAAGATCAAAAACTCAGGTGACAGCAGATGTTGATGAATATGTGGAGAAA
GGGGAACACTCCTCCATTGTTGGTGGTATTGTAAGCTTGTACAATCACTA
TTGGAAATCAGTCTGGCGGTTCCTCAGAATTTTGTTTTTTATATTATTTG
GAGGATCATGTGAATATATTTTTAGTGAATCCCCCCCCCCCCCCCCCNNA
ATTGTGTTTTAAGATGTTTGTTTTTTTTTTCCCCCCCTGTATNNTTAATT
NNNAAAAGNTGGTGTGGGGGGGGGGTATGTACTTTATTTATTAGTAATGG
CATATTTTATAATATATAGCATTGTTCAATAATGGTATTTATTTATTTCA
GGCATAATATATAAAAAATGGATTTTTTAATGAATATTCATTAAGGTATT
ACGAAATGGTTATATGGAAGAAGTATTTTATGTGTGTTGTAGTAGTATTT
CTCTTTTTCACAATTGTTATCTTCGCTATAAATTTTGTTATTAAATTGGA
ATTAGAGGGTAAACTAACGTTAATTTAAAACGTAAGTGATTTCCAATAGT
ATGTTTTTTATAAAAAAATATGAGAAATACATATTTGATTTTTAACATGA
AATTATTAATTTATTTCTTGATGTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no205_c19.b1 MSMg01no205_c19.b1 CHROMAT_FILE:
MSMg01no205_c19.b1 PHD_FILE: MSMg01no205_c19.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:26:59 2005
         (318 letters)



>mm_chr12_59989547_59990264
          Length = 718

 Score =  553 bits (286), Expect = e-162
 Identities = 307/314 (97%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtggatttttaaaagagcacatatatgtagctgggaaggaaaatggtggggag 64
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtgggtttttaaaagagcacatatatgtagctgggaaggaaaatggtggggag 264

                                                                       
Query: 65  tatataggaggagctgcaaaggataaaataatggtgcatttgattaaaacacagtattac 124
           ||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 265 tatatagaaggagctgaaaaggataaaataatggtggatttgattaaaacacagtattac 324

                                                                       
Query: 125 aatcccaaacaataaacttttttaaaattcgtgtctaattgttaattgaatatttgtatt 184
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 325 aatcccaaacaataaactttttaaaaattcgtgtctaattgttaattgaatatttgtatt 384

                                                                       
Query: 185 gactaaccctctgtgatagtttaaatatgctcagcccacaggaagtggcaccattagagg 244
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 385 gactaaccctctgtgatagtttaaatatgctcggcccacaggaagtggcaccattagagg 444

                                                                       
Query: 245 atgtggccttgttggagaaaatgagtcactgtgaacatgtgctttgaggtcctatgctca 304
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 445 atgtggccttgttggagaaaatgagtcactgtgaacatgggctttgaggtcctatgctca 504

                         
Query: 305 ggcactgcccagtg 318
           ||||||||||||||
Sbjct: 505 ggcactgcccagtg 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)