BAC Information

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BAC

Clone NameMSMg01-206D02
Chromosome12 (Build37)
Map Location 6,250,796 - 6,251,244
singlet/doubletsinglet
Overlap genenone
Upstream geneKlhl29, 2810032G03Rik, LOC435292, LOC100042095, LOC672098, LOC100043137
Downstream geneLOC238049, LOC100042118
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206D02.T7 (MSMg01no206_d02.b1)MSMg01-206D02.TJ (MSMg01no206_d02.g1)
ACCAG389899AG389900
length746742
length of high quality
(start - end)
234 (133 - 366)449 (135 - 583)
definitionCHROMAT_FILE: MSMg01no206_d02.b1 PHD_FILE: MSMg01no206_d02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:17 2005CHROMAT_FILE: MSMg01no206_d02.g1 PHD_FILE: MSMg01no206_d02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:17 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTTTCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCG
CGGAATTCTTTGTTTAGTTCTGTGCCCCATTTTTAATGGGGTTATCTGGT
TTTCTGCAGTCTATGTTATTGTTTTATCTATATGTATATATATATATATT
GGATATTAGTCCCCTATCAGATTTAGGATTGGTATAGAACTTTTCTCAAT
CTGTTGGTGGCCTTTTTGTCTTATTGACAGTGTCTTTTGCCTAACAGAAG
CTTTGCAATTTTATAAGGTCCCATTTGTTAATTCTCAATCTTACAGCACA
AGCCATTGCTGATCTGATCAGGAATTTTCCCCCTGTGCCCATATCCTCAA
GGCGTTTCCCCACTTTCTTTTCTATAAGTTTGAGTGTCTCTGGTTTTTAT
GTGTCATTCCTTGATCCACTCACACTTGAGCTTTGTGCAAGGAGATAAGA
ATGGATCAATTCACATTATTCTACATCATAGCTGCCAGTTGTGCAGGGAA
CATTTGTTATAAATGCTGTCTTTTTTTCACTGGGTGGTTTTAGCTCCTTT
GTCAAAGATCAAGTGACCATAGGTGTGTGGGTTCATTTCTGGGTCTTCAA
TTTTATTCCATTGATCTATCCATCTGTTGCTGTACCAGTACCCATGCAGT
TTTTATCACAATTGCTCTGTAGTACAGCTTGAGAATCAGCATGGTGGATT
CTCCACAGGTTCCGGCAATGGTGAAAATAATTTTTTTGCCTACCCG
CCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTTTCGCAATTCAGAACAGATGCCACGTTAGTCCT
TTAATAAACTGGACTCAGCAATAATTGACCTCAAGGAAAATTCAATCAAA
ACCCAAGTCTTATCTTTCTTCAAAAACAGGACAGTTGAGAATTGAATGTG
ATGTCCTGGAAAAATCGAAGAAGAAATAACATCAAACTAGTTTGTTCCTG
AAAACAAGGAACAAGAAATTGATGGCATTTTCACCTGCAGTTCCTACTAC
AAAAGACCCCAGGCTTAGAAATCATGCCACTTGACTCCCTTAAAATCCAA
CACACACATATACAGACAGAGACAGAGAACAAGGAACCATGGTGGTGACA
TTTCTAAAGTTATTTTGAAGTTGAACCCAAGTAGTTCATGGAAGCAATAG
TCATCAGTCCTTTGAACAGGTAAAAGTTAGCTACTCAAAGGGTTCTCTCT
CTTCAACTTCTTTGTGTAATGTGTAAAGGTGAGCAGGGGATGACATGAGA
AAAGAAGAGGTATTTAGATAGAGGGATAGGGCCTGGAGCTGATAGTCCTT
TCATAGTTTTAAAGAGGGGTAGTCAAGAGAGGTAACTATTTCTAAAGTAC
AGAGAAGGACTTACCGATTTACATGAGTGAGTTATGTTCCCAAGGAAGTG
TAACAAACCTCGGACAAAAGTATCCAGCTATGCCTCGACACT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_d02.g1 MSMg01no206_d02.g1 CHROMAT_FILE:
MSMg01no206_d02.g1 PHD_FILE: MSMg01no206_d02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:17 2005
         (449 letters)



>mm_chr12_6250596_6251444
          Length = 849

 Score =  853 bits (441), Expect = 0.0
 Identities = 447/449 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   ggaaaattcaatcaaaacccaagtcttatctttcttcaaaaacaggacagttgagaattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 649 ggaaaattcaatcaaaacccaagtcttatctttcttcaaaaacaggacagttgagaattg 590

                                                                       
Query: 61  aatgtgatgtcctggaaaaatcgaagaagaaataacatcaaactagtttgttcctgaaaa 120
           ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 589 aatatgatgtcctggaaaaatcgaagaagaaataacatcaaactagtttgttcctgaaaa 530

                                                                       
Query: 121 caaggaacaagaaattgatggcattttcacctgcagttcctactacaaaagaccccaggc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 529 caaggaacaagaaattgatggcattttcacctgcagttcctactacaaaagaccccaggc 470

                                                                       
Query: 181 ttagaaatcatgccacttgactcccttaaaatccaacacacacatatacagacagagaca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 ttagaaatcatgccacttgactcccttaaaatccaacacacacatatacagacagagaca 410

                                                                       
Query: 241 gagaacaaggaaccatggtggtgacatttctaaagttattttgaagttgaacccaagtag 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 409 gagaacaaggaaccatggtggtgacatttctaaagttattttgaagttgaatccaagtag 350

                                                                       
Query: 301 ttcatggaagcaatagtcatcagtcctttgaacaggtaaaagttagctactcaaagggtt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ttcatggaagcaatagtcatcagtcctttgaacaggtaaaagttagctactcaaagggtt 290

                                                                       
Query: 361 ctctctcttcaacttctttgtgtaatgtgtaaaggtgagcaggggatgacatgagaaaag 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 289 ctctctcttcaacttctttgtgtaatgtgtaaaggtgagcaggggatgacatgagaaaag 230

                                        
Query: 421 aagaggtatttagatagagggatagggcc 449
           |||||||||||||||||||||||||||||
Sbjct: 229 aagaggtatttagatagagggatagggcc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 449
Length of database: 849
Length adjustment: 10
Effective length of query: 439
Effective length of database: 839
Effective search space:   368321
Effective search space used:   368321
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)