BAC Information

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BAC

Clone NameMSMg01-206K12
Chromosome12 (Build37)
Map Location 92,964,605 - 93,052,195
singlet/doubletdoublet
Overlap geneSton2, LOC100039631, Sel1l
Upstream geneDio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1, EG666955
Downstream geneLOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-206K12.T7 (MSMg01no206_k12.b1)MSMg01-206K12.TJ (MSMg01no206_k12.g1)
ACCAG390188AG390189
length734731
length of high quality
(start - end)
593 (46 - 638)555 (150 - 704)
definitionCHROMAT_FILE: MSMg01no206_k12.b1 PHD_FILE: MSMg01no206_k12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:54 2005CHROMAT_FILE: MSMg01no206_k12.g1 PHD_FILE: MSMg01no206_k12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:28:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,964,605 - 92,965,189)(93,051,641 - 93,052,195)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATATGAATACCGTTTTTAAAAAGTTCAGTGTCACCCTTGGTCACA
TAAGGGATTTGAGACCCGCTTATATGAGATCAGTCTCTTAAAGCAAAGAT
AAAATCCAGAAAAAAAAAAAAAAAAGGAAAAGCATAAAGAATGCTCACAG
AAGCACTCTGCTAACTGCTGATAGTAGAGAGGACTCAAATGTCCACCGGT
AGCCTGGTGAATGGCCCGCTGTATAATGCCACGATCACATCAGATCAGAA
AGCACAGCAAGAGACACAGAGGCGATTAGCGTTCTAGGGAAGAGTGAGGG
CGTGTCTCACAGATACCAGGGTAAAGTCACAAAACACTAGCTGGAACATT
ATTCCATTTTTCCCAAAGCCCAAAACCAGACTAAATTAAATCATATTCTC
CTTGACGAATGTGTCGGTCATAAAGCTGTCCAAAGAAGGTACAGAGACGA
GTAATGCCGTTGTTACCCCGAGGTGTAGGGGGTGGGAAGCAGCTAAGGGA
GGGCTGTGATGGAGGAGGCTGTGGCTAGGAGGGACTCACAGGCCTTTGGG
GTGTTGGAAATACTCCACTTATTAAAGGGGTGACACGTGTGCTGCTGTTC
TTTATACTTTAATCTACTTAAAAAACCCACCTGCTTGTGATTATTCACTT
GTAATGAAACTTATTAACCCCACATATCAAAAAG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXT
GTCAGACCTCGGGTTACAGGAGGAGAAGCAGGCCTCCAGTGTGTCAGCAC
TGTCCCTGCACCTCATATCCAGCACATACATGAGGGTGAGCTCTGCTCTA
TGCTGGGTAGCGCTCTCTGTTGAAAGCCTCTTCTTTCAGGAACTGTATTG
GCATTTAGTCAACACAGTTGCCTCGGAGTCATTTTGAAATGGAATAAAAT
CTTTTCTACCGATGAACGTTTTCCTGATCTTCATCTTCCTAATGAAATCT
AGTTTTCTTTAGAATGGCCCCAAGTTTTGCCCTACCTACCCCAAAAGGAT
TCAGAGAAAGTATTACTACTTGTATGCTTTGGAATAAAGACTGCGATAAG
AGTATTCTAGAAGAGAAGTGGGGTCCAACCTTTGAAAATAAGTAATTGGA
TACAAAACTCAAAGTGACTCCATAGCATGGCATGACTTACAGAGTGTAAC
AGTCACCCTTTCCTTTCTTTCCTACTTTGTAAATGACGTCAACATTCTTA
CTACTCCCAGCTCGTCAGTGCCGCTGGACATGCTGGCACACCCTGTAACA
GGGTAGAGGCAAGGGGTCGGGGTCAAGGTCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no206_k12.b1 MSMg01no206_k12.b1 CHROMAT_FILE:
MSMg01no206_k12.b1 PHD_FILE: MSMg01no206_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:54 2005
         (593 letters)



>mm_chr12_92964401_92965391
          Length = 991

 Score =  986 bits (510), Expect = 0.0
 Identities = 568/588 (96%), Gaps = 4/588 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatgaataccgtttttaaaaagttcagtgtcacccttggtcacataagggatt 64
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgaatattgtttttaaaaagttcagtgtcacccttggtcacataagggatt 264

                                                                       
Query: 65  tgagacccgcttatatgagatcagtctcttaaagcaaagataaaatccagaaaaaaaaaa 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagacccgcttatatgagatcagtctcttaaagcaaagataaaatccagaaaaaaaaaa 324

                                                                       
Query: 125 aaaaaaggaaaagcataaagaatgctcacagaagcactctgctaactgctgatagtagag 184
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaa--ggaaaagcataaagaatgctcacagaagcactctgctaactgctgatagtagag 382

                                                                       
Query: 185 aggactcaaatgtccaccggtagcctggtgaatggcccgctgtataatgccacgatcaca 244
           ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 383 aggactcaaatgtccaccggtagcctggtgaatggcctgctgtataatgccatgatcaca 442

                                                                       
Query: 245 tcagatcagaaagcacagcaagagacacagaggcgattagcgttctagggaagagtgagg 304
           ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 443 tcagatcagaaagcacagcaagagacacagaagcgattagcgctctagggaagagtgagg 502

                                                                       
Query: 305 gcgtgtctcacagataccagggtaaagtcacaaaacactagctggaacattattccattt 364
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcgtgcctcacagataccagggtaaagtcacaaaacactagctggaacattattccattt 562

                                                                       
Query: 365 ttcccaaagcccaaaaccagactaaattaaatcatattctccttgacgaatgtgtcggtc 424
           | |||||||  |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 563 t-cccaaagttcaaaaccagactcaattaaatcatattctccttgacgaatgtgtcggtc 621

                                                                       
Query: 425 ataaagctgtccaaagaaggtacagagacgagtaatgccgttgttaccccgaggtgtagg 484
           |||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct: 622 ataaagctgtccaaagaaggtacagagatgagtaatgccgttgttaccccgaggcgtggg 681

                                                                       
Query: 485 gggtgggaagcagctaaggga-gggctgtgatggaggaggctgtggctaggagggactca 543
           ||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 682 gggtgggaagcagctaaaggaagggctgtgatggaggaggctgtggctagtagggactca 741

                                                           
Query: 544 caggcctttggggtgttggaaatactccacttattaaaggggtgacac 591
           ||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 742 caggcctttggggtgttggtaatactccacttattaaaggggtgacac 789


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 991
Length adjustment: 10
Effective length of query: 583
Effective length of database: 981
Effective search space:   571923
Effective search space used:   571923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no206_k12.g1 MSMg01no206_k12.g1 CHROMAT_FILE:
MSMg01no206_k12.g1 PHD_FILE: MSMg01no206_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:54 2005
         (555 letters)



>mm_chr12_93051441_93052395
          Length = 955

 Score =  973 bits (503), Expect = 0.0
 Identities = 542/555 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtcagacctcgggttacaggaggagaagcaggcctccagtgtgtcagcactgtccctgc 60
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgtcagacctcgggctacaggaggagaagcaggcctccagtgtgtcagcactgtccctgc 696

                                                                       
Query: 61  acctcatatccagcacatacatgagggtgagctctgctctatgctgggtagcgctctctg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 acctcatatccagcacatacatgagggtgagctctgctctatgctgggtagcgctctctg 636

                                                                       
Query: 121 ttgaaagcctcttctttcaggaactgtattggcatttagtcaacacagttgcctcggagt 180
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 635 ttgaaagcctcttctttcaggaactgtatcggcatttagtcaacacagttgcctcggagt 576

                                                                       
Query: 181 cattttgaaatggaataaaatcttttctaccgatgaacgttttcctgatcttcatcttcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cattttgaaatggaataaaatcttttctaccgatgaacgttttcctgatcttcatcttcc 516

                                                                       
Query: 241 taatgaaatctagttttctttagaatggccccaagttttgccctacctaccccaaaagga 300
           |||||||||||||||||||||||| |||  | ||||||||||||||||||||||||||||
Sbjct: 515 taatgaaatctagttttctttagagtggttctaagttttgccctacctaccccaaaagga 456

                                                                       
Query: 301 ttcagagaaagtattactacttgtatgctttggaataaagactgcgataagagtattcta 360
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 455 ttcagagaaagtattactacttgtatgctttggaataaagactacgataagagtattcta 396

                                                                       
Query: 361 gaagagaagtggggtccaacctttgaaaataagtaattggatacaaaactcaaagtgact 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 395 gaagagaagtggggtccaacctttgaaaataagtaattggatacaaaactcacagtgact 336

                                                                       
Query: 421 ccatagcatggcatgacttacagagtgtaacagtcaccctttcctttctttcctactttg 480
           |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 335 ccatagcatggcatgacttacagagtgtcacagtcacccttccctttctttcctactttg 276

                                                                       
Query: 481 taaatgacgtcaacattcttactactcccagctcgtcagtgccgctggacatgctggcac 540
           ||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 275 taaatgacgtcaacattcttactactcccagctggtcagtgctgctggacacgctggcac 216

                          
Query: 541 accctgtaacagggt 555
           |||||||||||||||
Sbjct: 215 accctgtaacagggt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space:   515025
Effective search space used:   515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)