Query= MSMg01no206_k12.b1 MSMg01no206_k12.b1 CHROMAT_FILE:
MSMg01no206_k12.b1 PHD_FILE: MSMg01no206_k12.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:54 2005
(593 letters)
>mm_chr12_92964401_92965391
Length = 991
Score = 986 bits (510), Expect = 0.0
Identities = 568/588 (96%), Gaps = 4/588 (0%)
Strand = Plus / Plus
Query: 5 gaattcatatgaataccgtttttaaaaagttcagtgtcacccttggtcacataagggatt 64
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcatatgaatattgtttttaaaaagttcagtgtcacccttggtcacataagggatt 264
Query: 65 tgagacccgcttatatgagatcagtctcttaaagcaaagataaaatccagaaaaaaaaaa 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tgagacccgcttatatgagatcagtctcttaaagcaaagataaaatccagaaaaaaaaaa 324
Query: 125 aaaaaaggaaaagcataaagaatgctcacagaagcactctgctaactgctgatagtagag 184
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaaa--ggaaaagcataaagaatgctcacagaagcactctgctaactgctgatagtagag 382
Query: 185 aggactcaaatgtccaccggtagcctggtgaatggcccgctgtataatgccacgatcaca 244
||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||
Sbjct: 383 aggactcaaatgtccaccggtagcctggtgaatggcctgctgtataatgccatgatcaca 442
Query: 245 tcagatcagaaagcacagcaagagacacagaggcgattagcgttctagggaagagtgagg 304
||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||
Sbjct: 443 tcagatcagaaagcacagcaagagacacagaagcgattagcgctctagggaagagtgagg 502
Query: 305 gcgtgtctcacagataccagggtaaagtcacaaaacactagctggaacattattccattt 364
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 503 gcgtgcctcacagataccagggtaaagtcacaaaacactagctggaacattattccattt 562
Query: 365 ttcccaaagcccaaaaccagactaaattaaatcatattctccttgacgaatgtgtcggtc 424
| ||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 563 t-cccaaagttcaaaaccagactcaattaaatcatattctccttgacgaatgtgtcggtc 621
Query: 425 ataaagctgtccaaagaaggtacagagacgagtaatgccgttgttaccccgaggtgtagg 484
|||||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||
Sbjct: 622 ataaagctgtccaaagaaggtacagagatgagtaatgccgttgttaccccgaggcgtggg 681
Query: 485 gggtgggaagcagctaaggga-gggctgtgatggaggaggctgtggctaggagggactca 543
||||||||||||||||| ||| |||||||||||||||||||||||||||| |||||||||
Sbjct: 682 gggtgggaagcagctaaaggaagggctgtgatggaggaggctgtggctagtagggactca 741
Query: 544 caggcctttggggtgttggaaatactccacttattaaaggggtgacac 591
||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 742 caggcctttggggtgttggtaatactccacttattaaaggggtgacac 789
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 593
Length of database: 991
Length adjustment: 10
Effective length of query: 583
Effective length of database: 981
Effective search space: 571923
Effective search space used: 571923
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no206_k12.g1 MSMg01no206_k12.g1 CHROMAT_FILE:
MSMg01no206_k12.g1 PHD_FILE: MSMg01no206_k12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:28:54 2005
(555 letters)
>mm_chr12_93051441_93052395
Length = 955
Score = 973 bits (503), Expect = 0.0
Identities = 542/555 (97%)
Strand = Plus / Minus
Query: 1 tgtcagacctcgggttacaggaggagaagcaggcctccagtgtgtcagcactgtccctgc 60
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 755 tgtcagacctcgggctacaggaggagaagcaggcctccagtgtgtcagcactgtccctgc 696
Query: 61 acctcatatccagcacatacatgagggtgagctctgctctatgctgggtagcgctctctg 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 695 acctcatatccagcacatacatgagggtgagctctgctctatgctgggtagcgctctctg 636
Query: 121 ttgaaagcctcttctttcaggaactgtattggcatttagtcaacacagttgcctcggagt 180
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 635 ttgaaagcctcttctttcaggaactgtatcggcatttagtcaacacagttgcctcggagt 576
Query: 181 cattttgaaatggaataaaatcttttctaccgatgaacgttttcctgatcttcatcttcc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 575 cattttgaaatggaataaaatcttttctaccgatgaacgttttcctgatcttcatcttcc 516
Query: 241 taatgaaatctagttttctttagaatggccccaagttttgccctacctaccccaaaagga 300
|||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||
Sbjct: 515 taatgaaatctagttttctttagagtggttctaagttttgccctacctaccccaaaagga 456
Query: 301 ttcagagaaagtattactacttgtatgctttggaataaagactgcgataagagtattcta 360
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 455 ttcagagaaagtattactacttgtatgctttggaataaagactacgataagagtattcta 396
Query: 361 gaagagaagtggggtccaacctttgaaaataagtaattggatacaaaactcaaagtgact 420
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 395 gaagagaagtggggtccaacctttgaaaataagtaattggatacaaaactcacagtgact 336
Query: 421 ccatagcatggcatgacttacagagtgtaacagtcaccctttcctttctttcctactttg 480
|||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||
Sbjct: 335 ccatagcatggcatgacttacagagtgtcacagtcacccttccctttctttcctactttg 276
Query: 481 taaatgacgtcaacattcttactactcccagctcgtcagtgccgctggacatgctggcac 540
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||||||
Sbjct: 275 taaatgacgtcaacattcttactactcccagctggtcagtgctgctggacacgctggcac 216
Query: 541 accctgtaacagggt 555
|||||||||||||||
Sbjct: 215 accctgtaacagggt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 555
Length of database: 955
Length adjustment: 10
Effective length of query: 545
Effective length of database: 945
Effective search space: 515025
Effective search space used: 515025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|