BAC Information

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BAC

Clone NameMSMg01-207G21
Chromosome12 (Build37)
Map Location 39,437,476 - 39,438,133
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100043139, Dgkb, LOC668824
Downstream geneLOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207G21.T7 (MSMg01no207_g21.b1)MSMg01-207G21.TJ (MSMg01no207_g21.g1)
ACCAG390660AG390661
length1,1711,244
length of high quality
(start - end)
345 (419 - 763)661 (86 - 746)
definitionCHROMAT_FILE: MSMg01no207_g21.b1 PHD_FILE: MSMg01no207_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:21 2005CHROMAT_FILE: MSMg01no207_g21.g1 PHD_FILE: MSMg01no207_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:21 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ATCCTTNNNNAACACTCGCGCTAAGACTCCTAAGGGAGAGGATCCGCGGA
ATTCCAATGGCTGAGAAGCACCCGCTTTTATGTTCAGCATCCTTAATCAT
CAGAGAAATACACCCCCTTACAACCCTGAGATTCCACCTCACACCAATCA
GAATGGACAAGATCAAAAACTCAGGTGATAGCAGATGCTGGCAAGGATAT
GGAAAAAGAGGAACACTCCTCCACTGTTGGTGGGATTGCAAGTTTTTACA
ACCACTATGGAAATCAGTCTGGTGGTTCCTCAGAAAATTGGACATAGTAC
TACTGGAGGATCCAGCAATACCTCTTCTGGGTATATATCCCAAAGATGTT
CCAAATGGTAATAAGAACACATGTTCCACTATGTTCATAGCAGCCTTATT
TATAAAAGCCTTATTCTGGAAAGAACCCAGATGTCCCTTAACAGAGGAAT
GTATTCAAAAATGTGGTACATTTACACAATAGAGTACTACTCACCTATTA
AAAGAATGAATTTATGAAATTCCTAGGCAAATGGATGGACCTGGAGGGCA
TCATCCTGAGTGAGGTAACCCAGTCACAAAAGAACTCACATGATATGTAC
TCACTGATAAGTGGATATTAGCCCAGAAACTTAGAATACTCAAGAATCAA
GATACAATCTGCAAAACACATGAAACTCAAGAAAAACAAAGACCAAAATG
TGGACACTTTGCCCCTTCTTAGAATTGGGAACAAAACACCCATGCAAGGA
GTTACAGAGACAAATTTTGGAGCTGAGACAAAAGAATGGACTATCTAGAG
AGTGCCATACCCGGGGAACCATCCCATAATCTGCCTCCAAAAGCTGACAC
CATTGCATACACTAGCAAAATTTTTGTGAAAGGACCTAGAAAATAGCTGT
CTTTTTGTGATGCTATGCCGGGGGCCTATCAAACACAGAAATTGGATGTT
TCTCAGTCCGTTTGTTGGAATGGGATTCCAGGGGCCCCCCCACGTGGTAG
GTAGTTAAGGGAAAAGTACCCCCAGGGAGCTTAAAGGGGGGTCCGGTAAA
CCCCCCTTTAGGGGGTTAACACCCTTAATTTTAAACTTTTTCCCGTGTTC
CCTCCCCTCTTTCTCCCTCTTAAAAACTTGGTGGGCTCCTTATTCTGGGT
ATATTGTTTTCCCTAACAAAA
NCCAGTTATNNNNNATAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCCTTGAAAATTTGAGAAAACTA
GATTGTAAAAAACAAACAACCTTATAAACAAACAAACACCCCCCCTTAAA
ATAAAAGGGAAAAATTTTTTTAAAAAGTTGAGAGAAGTAAAATATATTTT
GATAAAAGACATGTAATAGGCTAGGCTTGGCTCATTTATTAAATGTGGAT
ATAAAATACAATTTTTTTTTACAATCTTAGATTGAACTGATGAACAGGTG
AAATTATTAGAAAAATGGAAAGTCAAAAGGGAAAGATATTTCTGTCACTT
CTGTAGAGGAAGCATTTTTTAAATGAAATATAATATTTCTGTTAAATTTT
TGAGCATTTCATTGATCACCTGAACGTCTTCCACTAACTCCTTCCAGATA
TATTTCCATTACCTAATCATTCCCTCCTGCCCCAAAGTTCAACTTGTGCT
AGCTATGTATTCATGCTGTGGAGCCATTCAGTCATCATGATCAGCCCACC
AGGACCACACCGTTAAAGCTGGCATATCCACCTGTAGAAACCATGAATTA
TTAACAACTCTTTAGCCTCTCGAGCTTGTGAGCTCCCTTCCTAGGAGGTA
CTTTAAAAAAAGTATATAGGAAGATTTATTTTTATGTAAAAATAAGCAAG
CACAACCATCTCAGTTGCATGCACCCGTGTTTTCATCTATAATANACAGT
ANAATTGCATGTGCCAAAGAAAATAATAAATCACTCAATGGAAGAGTTAA
AAGCCATTTAATAAAAACTTTATTTGGAAATAAATTTCTCTATTACAACA
ACAGCAGCAACTACTACTACTACTATGACAATGATGACAGTGACTACTAT
GACTACTAATACTATTAAAGTGATTCAGTTGAGGGGGCTTGGTCTTATTT
CAGAAGCGAACCGTTTCCTCCCCTTTTAACCTTTGGATTTATATTGAAGG
CCTCATCTAAGCCCTGGTTCCAACTTACTCCTAAAACAATTTTAATAGGT
GTATTTTTAAAAAGTACAGGTTTAAAAACCCCTGTCTCCAATTGAAATTT
CTTTTCCCAATATTTTTTTATACACCCCTGTTAAAACACTTAAATGGTCC
TACCTCAAAGTTCTATCTTTTTTCGGGTGGGCCTAAATAATTCTTTTTTA
TTTCTATTGCTTTAATATAAGATACTACATATTAATGCTACTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_g21.g1 MSMg01no207_g21.g1 CHROMAT_FILE:
MSMg01no207_g21.g1 PHD_FILE: MSMg01no207_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:21 2005
         (661 letters)



>mm_chr12_39437350_39438409
          Length = 1060

 Score = 1181 bits (611), Expect = 0.0
 Identities = 647/663 (97%), Gaps = 9/663 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   aatttgagaaaactagattgtaaaaaacaaacaaccttataaacaaacaaacaccc---- 56
           ||||||||||||||||||||||||||||||||||    | |||||||||||||  |    
Sbjct: 784 aatttgagaaaactagattgtaaaaaacaaacaa----acaaacaaacaaacaaacaaaa 729

                                                                       
Query: 57  ccccttaaaataaaagggaaaaatttttttaaaaagttgagagaagtaaaatatattttg 116
           ||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 728 ccccttaaaataaaagggaaaaa-tttttaaaaaagttgagagaagtaaaatatattttg 670

                                                                       
Query: 117 ataaaagacatgtaataggctaggcttggctcatttattaaatgtggatataaaatacaa 176
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 669 ataaaagacatgtaataggctaggcttggctcatttattaaatgtggatataaaatacaa 610

                                                                       
Query: 177 tttttttttacaatcttagattgaactgatgaacaggtgaaattattagaaaaatggaaa 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 609 tttttttttacaatcttagattgaactgatgaacaggtgaaattattagaaaaatggaaa 550

                                                                       
Query: 237 gtcaaaagggaaagatatttctgtcacttctgtagaggaagcattttttaaatgaaatat 296
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 549 gtcaaaagggaaagatatttctgtcacttctgtagaggaagcattttttaaatgaaatat 490

                                                                       
Query: 297 aatatttctgttaaatttttgagcatttcattgatcacctgaacgtcttccactaactcc 356
           |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 489 aatatttccgttaaatttttgagcatttcattgatcacctgaacgtcttccactaactcc 430

                                                                       
Query: 357 ttccagatatatttccattacctaatcattccctcctgccccaaagttcaacttgtgcta 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 429 ttccagatatatttccattacctaatcattccctcctgccccaaagttcaatttgtgcta 370

                                                                       
Query: 417 gctatgtattcatgctgtggagccattcagtcatcatgatcagcccaccaggaccacacc 476
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 gctatgtattcatgctgtggagccattcagtcatcatgatcagcccaccaggaccacacc 310

                                                                       
Query: 477 gttaaagctggcatatccacctgtagaaaccatgaattattaacaactctttagcctctc 536
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 gttaaagctggcatatccacctgtagaaaccatgaattattaacaactctttagcctctc 250

                                                                       
Query: 537 gagcttgtgagctcccttcctaggaggtactttaaaaaaagtatataggaagatttattt 596
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 249 gagcttgtgagctcccttcctaggaggtactttaaaaaaagtatataggaaggtttattt 190

                                                                       
Query: 597 ttatgtaaaaataagcaagcacaaccatctcagttgcatgcacccgtgttttcatctata 656
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 189 ttatgtaaaaataagcaagcacaaccatctcagttgcatgcacccgtgttttcatctata 130

              
Query: 657 ata 659
           |||
Sbjct: 129 ata 127


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 38
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 661
Length of database: 1060
Length adjustment: 10
Effective length of query: 651
Effective length of database: 1050
Effective search space:   683550
Effective search space used:   683550
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)