BAC Information

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BAC

Clone NameMSMg01-207H05
Chromosome12 (Build37)
Map Location 15,601,866 - 15,703,164
singlet/doubletdoublet
Overlap genenone
Upstream geneMap1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273, Lpin1, Ntsr2, Greb1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-207H05.T7 (MSMg01no207_h05.b1)MSMg01-207H05.TJ (MSMg01no207_h05.g1)
ACCAG390675AG390676
length1,1941,211
length of high quality
(start - end)		202 (204 - 405)387 (72 - 458)
definitionCHROMAT_FILE: MSMg01no207_h05.b1 PHD_FILE: MSMg01no207_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:24 2005CHROMAT_FILE: MSMg01no207_h05.g1 PHD_FILE: MSMg01no207_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:30:24 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(15,601,866 - 15,602,043)(15,702,781 - 15,703,164)
sequence
CGTTATNNNNNNGACACTGGGCGGATAGACTACTATGGGAGAGGATCCGC
GGAATTCCCTCCAACTTTGGANACCATTTATGCTCCTACNCGNGAGNGGA
AAAACANNGGNAGGCCTTTAAAATATCAGCAACCATGAAAGAANATGACT
TCTGACCTTTTGTACTCAGTTTTTTAGATTAAAAAATTCCTTGGAATTTC
AGACATGTTATATTTCCCCTTTCTGCTTGTTGCCTGTGACTTTTCACTGG
AGACATTGATGAGTAACAAAAGGAGAACTTGACTATGGGAGGACAATATT
TTTATTTCTATTAAATTTTGCAACTTGACTGCTTTTGTGTTCTCCCTCTC
CCTCTCCCTCTCCCTCTCCCTCTCCCTCTCCAAGTTCTCAAATCCCAGAC
TATTGTTTTTTTTAANANANNCNCNCNANCCCNNCAGGNNCACAAAGACC
ACACGTTTTTTTTTTGCCCCGCACCCCAGGCNAGCCCGGAACAAAAAAAA
AAAGGGGGNCNNNCNCTTCNGNNCTGGNANTAAAGACTTTTGCTATCAAA
ATTGGCTCTGTTGCTTACTTCTCTGTTTGCATAATTTTTTAAAGATTTGT
TTTTATTTTTAATTATATGTATATATGTATATTTATCTGTGAATTGCTAA
GTGAGCATGATTGATTTGTATATGAAGGGAATATGATTGTTTTTATTATA
TTGAAATGATGTTGGTGAGGGTTGAATTAATTTGTTATATTTGGTATAAT
AAATATTATAGGCAGGTGAACGAGTTTTTTTTTTTTTTTGAAAGAATCAA
ATTTTAGTTCTGATATTAAAGATGTTATTTTTTTATAAGGATAAGAGATA
TGATATATTTTTATTTATTTTATGGAATGAGATTATATAAATAATTTTCA
GTTTATATTATAAAATATTGTGCAAATATATTAAATATTGATTATCAATG
TGAGATTATTTGTGAACTCATAATATAGATTTATTATCTTATATATAATA
TTTTATATTACTTGTATGTTTTTATATATATTATATTTTTATAGTTATTA
TAGTATTAATTGATTATAAAGAGTTTATGTTATAATTTATAATAATATAT
TTAAATTGTTATTTTTTAGTAGTTTGTTTATTCTTATATTGGGGTGTAAT
AATTTATTGCATTTAATTATTTTGTTATTGTTTAAATTTATTAT

NNNGGGAAGATGTGAGGCTGGGGCGCCXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXTTATTGCTTCCAGTCCATCCAATAGCTCC
ACTGAAGGAGACTTAACATAGCAAGTCCCAAGTTTATGGAGTCAAAAAGA
CATCAAGAGTGTAATACTAAATAAAGCAAAGCACCCAGAGGTGTCTCTTC
TCTCTTGGAATCCTTGTCTACAGCACAACAGTTCCATTACAAGCACGCAA
GCCACCAGCATGCACATGGATAGCTGCTGGGAACATTCATTAGCAGAGGG
ATGGCATTGATGCTGATGAGAACCATAGCCAGACTTCATCTCACACCAGA
CAGAGCTGCTGTCATCACAAAGATGAAACTGTGAAAAAACAATGAGAAGG
GAACCCATGTGTACTGTCAGCACATGTGTGACAGTGCAATCAGCATGGAA
AACAGTTTTTTTGTACCCTCCAATCTGAAAGCAGAATTACTGGATAAATA
AAAAAAATCTCACTTCTGGGTTTTTATCCAAAGGAAAGGCAGTTAATATG
TGAAAAACAAATCGCCTCCTCCTATGCTCTTTGTGACATTCTGGACATGG
AGCCAACACAGTGACCATCTGAGTCAAGGGTGGTGATGATAATAGTGGTG
GTGATGATGNNGTNNNNNNNNNNTNNTNTNNTTTTTTTTTTTTTTTTTTT
TNNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTTTTTT
TTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTTNNTTTTTTTTT
TTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTNTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTT
TTTTTTTTNTNTTTTTTTTTTTTTTNTTTTTTTTTTTTTTTTTTTTTTTT
TNTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTTTTTTTTTTTTTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNNTTN
TTTTTTTNNTTTTTTTTTTNTTNTTTTTTTTTTTTTTTTNTTTNTTTTTT
TTTTTTTTNTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no207_h05.b1 MSMg01no207_h05.b1 CHROMAT_FILE:
MSMg01no207_h05.b1 PHD_FILE: MSMg01no207_h05.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:24 2005
         (202 letters)



>mm_chr12_15601666_15602267
          Length = 602

 Score =  321 bits (166), Expect = 2e-92
 Identities = 175/178 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   catgttatatttcccctttctgcttgttgcctgtgacttttcactggagacattgatgag 60
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 catgttatattttccctttctgcttgttgcctgtgacttttcactggagacattgatgag 260

                                                                       
Query: 61  taacaaaaggagaacttgactatgggaggacaatatttttatttctattaaattttgcaa 120
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 261 taacaaaaggagaacttgactatgggaggacaatatttttctttctattaaattttgcaa 320

                                                                     
Query: 121 cttgactgcttttgtgttctccctctccctctccctctccctctccctctccctctcc 178
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cttgactgcttttctgttctccctctccctctccctctccctctccctctccctctcc 378


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 14
Number of successful extensions: 14
Number of sequences better than 10.0: 1
Number of HSP's gapped: 14
Number of HSP's successfully gapped: 1
Length of query: 202
Length of database: 602
Length adjustment: 8
Effective length of query: 194
Effective length of database: 594
Effective search space:   115236
Effective search space used:   115236
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no207_h05.g1 MSMg01no207_h05.g1 CHROMAT_FILE:
MSMg01no207_h05.g1 PHD_FILE: MSMg01no207_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:30:24 2005
         (387 letters)



>mm_chr12_15702727_15703513
          Length = 787

 Score =  681 bits (352), Expect = 0.0
 Identities = 376/384 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ttattgcttccagtccatccaatagctccactgaaggagacttaacatagcaagtcccaa 60
           |||||||||||||||||||||||||||||||||||||||||  |||||||||||||  ||
Sbjct: 438 ttattgcttccagtccatccaatagctccactgaaggagacagaacatagcaagtctgaa 379

                                                                       
Query: 61  gtttatggagtcaaaaagacatcaagagtgtaatactaaataaagcaaagcacccagagg 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||
Sbjct: 378 gtttatggagtcaaaaagacatcaagagtgtaatactaaataaagcaaagcacagagagg 319

                                                                       
Query: 121 tgtctcttctctcttggaatccttgtctacagcacaacagttccattacaagcacgcaag 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 318 tgtctcttctctcttggaatccttgtctacagcacaacagttccattacaagcatgcaag 259

                                                                       
Query: 181 ccaccagcatgcacatggatagctgctgggaacattcattagcagagggatggcattgat 240
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 258 ccaccagcatgcacatggatagctgctgggaacattcattagcagaaggatggcattgat 199

                                                                       
Query: 241 gctgatgagaaccatagccagacttcatctcacaccagacagagctgctgtcatcacaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 198 gctgatgagaaccatagccagacttcatctcacaccagacagagctgctgtcatcacaaa 139

                                                                       
Query: 301 gatgaaactgtgaaaaaacaatgagaagggaacccatgtgtactgtcagcacatgtgtga 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 gatgaaactgtgaaaaaacaatgagaagggaacccatgtgtactgtcagcacatgtgtga 79

                                   
Query: 361 cagtgcaatcagcatggaaaacag 384
           ||||||||||||||||||||||||
Sbjct: 78  cagtgcaatcagcatggaaaacag 55


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 387
Length of database: 787
Length adjustment: 9
Effective length of query: 378
Effective length of database: 778
Effective search space:   294084
Effective search space used:   294084
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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