BAC Information

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BAC

Clone NameMSMg01-208A20
Chromosome12 (Build37)
Map Location 14,880,494 - 14,880,800
singlet/doubletsinglet
Overlap genenone
Upstream geneAW125753, LOC100043256, Map1lc3-ps7
Downstream geneLOC668492, LOC100042426, LOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208A20.T7 (MSMg01no208_a20.b1)MSMg01-208A20.TJ (MSMg01no208_a20.g1)
ACCAG391062AG391063
length714772
length of high quality
(start - end)
312 (46 - 357)288 (130 - 417)
definitionCHROMAT_FILE: MSMg01no208_a20.b1 PHD_FILE: MSMg01no208_a20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:44 2005CHROMAT_FILE: MSMg01no208_a20.g1 PHD_FILE: MSMg01no208_a20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:31:44 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTTCCTATTTTGCAAAGCACACACATGCACATATGCACACATATA
CACGTGCACACATATACATAAATCAATGCTAAAAGCATTCCTACCTGTCA
TGTACATTGTTGAATAATTTTCAAATACCCAATAATTTTTATAAGACTTT
ATATACATGACCTAATTATATGGTATCTGAAAGAGGCAGAAGCTTCGGGT
AATAGATTTTTTTTTCCTTCTTCCCTTCAAGTGACATACATCTGCATTAT
CCAGTGTCTCTGCAAATTATACCTGGAAAAGTTTTCTTTCACTGACATCC
TAGAAGTATTTTAATTCACCCCACCGCACCGCATTTGTGAGAGGAGTATA
CTATCTATCAGTCCCCACCACGCAAAGAAATGCCCACAATGATATGAGCA
TAAAGTATTTAAATTTTCTAAATACTGATTTGAGAGGGATAAGGAAACCT
CACATGGGTAATATGAGGGCCACATGGCAGAGAACTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCATTCATATATATATATATATATATATATA
TATATATATATATATGTATGAGAGAGAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAGCGGGCTCGTGACCTCCATATCACCACTGTTTGCTTTCGCC
ATTTCTCTTTCACC
TCCCTCCCTCTCCCCCCTTCCCCCCCTCCACCCNCANNNNNNNNNNNNNN
NTCTCTATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATG
GCAAAGAAGCACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGCAAT
GCAAATCAAAACAACCCTGAGATTCCACCTAACACCAGTCAGAATGGCTA
AAATCAAAAATTCAGGTGACAGCAAATGCTGGCGTGAATGTGGAGAAAGA
GGAACACTCCTCCATTGTTGGTGGAATTGCAGGCCTGTACAAACACTCTG
GAAATCCGTCTGGCGGTTCCTCAAAAAACTGGACATAGTACTACCGGAGG
ATCCAGCAATACCTCTCTTGTTTATATCCCCACAACATGCCCCAACTGGT
AAGAAGGTCACATGCTCCACTACCCCCAAACAAACCTTATTTATAATAGC
CGGAACCTGGAAGGATCCCAGATGCCCCTCAACAGAGGATTGGATACAGA
AAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAAAAAGAAT
GAATTTATGAAATTCCTAGCCAAATGGATGGATCTGGAGGGCATCATCCT
GAGTGAGGTAACACATTCACAAAGGAACTCACACAATATGTACTCACTGA
GAAGTGGATATTACCCCAAAACCTAGGATATCCAAGATATAAGATCCATT
TTCCTAAACACTTGAAACTCAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_a20.b1 MSMg01no208_a20.b1 CHROMAT_FILE:
MSMg01no208_a20.b1 PHD_FILE: MSMg01no208_a20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:31:44 2005
         (312 letters)



>mm_chr12_14880291_14881001
          Length = 711

 Score =  580 bits (300), Expect = e-170
 Identities = 306/308 (99%), Gaps = 1/308 (0%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattctttcctattttgcaaagcacacacatgcacatatgcacacatatacacgtgca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctttcctattttgcaaagcacacacatgcacatatgcacacatatacacgtgca 263

                                                                       
Query: 64  cacatatacataaatcaatgctaaaagcattcctacctgtcatgtacattgttgaataat 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cacatatacataaatcaatgctaaaagcattcctacctgtcatgtacattgttgaataat 323

                                                                       
Query: 124 tttcaaatacccaataatttttataagactttatatacatgacctaattatatggtatct 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tttcaaatacccaataatttttataagactttatatacatgacctaattatatggtatct 383

                                                                       
Query: 184 gaaagaggcagaagcttcgggtaatagatttttttttccttcttcccttcaagtgacata 243
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 384 gaaagaggcagaagcttcgggtaatagatttttttt-ccttcttcccttcaagtgacata 442

                                                                       
Query: 244 catctgcattatccagtgtctctgcaaattatacctggaaaagttttctttcactgacat 303
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 443 catctgcattatccagagtctctgcaaattatacctggaaaagttttctttcactgacat 502

                   
Query: 304 cctagaag 311
           ||||||||
Sbjct: 503 cctagaag 510


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 312
Length of database: 711
Length adjustment: 9
Effective length of query: 303
Effective length of database: 702
Effective search space:   212706
Effective search space used:   212706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)