BAC Information

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BAC

Clone NameMSMg01-208F24
Chromosome12 (Build37)
Map Location 112,927,848 - 112,928,129
singlet/doubletsinglet
Overlap genenone
Upstream geneHsp90aa1, Wdr20a, Rage, 2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik
Downstream geneBag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21, Ppp1r13b, LOC100041886, 2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-208F24.T7 (MSMg01no208_f24.b1)MSMg01-208F24.TJ (MSMg01no208_f24.g1)
ACCAG391282AG391283
length647701
length of high quality
(start - end)
---283 (77 - 359)
definitionCHROMAT_FILE: MSMg01no208_f24.b1 PHD_FILE: MSMg01no208_f24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:10 2005CHROMAT_FILE: MSMg01no208_f24.g1 PHD_FILE: MSMg01no208_f24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:32:10 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCAAAATCATTTCGCGTCGANNNNNNNNNNNNTCCCAAAAGGGGNNNNN
NNNAAAATTCCAAAAAAGGGGGGNNNGGAAAAAAAGACAAAGGGAAAAAN
NAAATTGTAACACACAAAAAAAAGGGGGGNAAAAATTCCCCAACCCCCCC
CCCCCTTTACTATACACACTCTCTTATTTCCCATCCCCTCTCCTCTCTTC
CCCTCCCCCATTTTTTTTTTTCCCCCTCCTTTTTAATTCCCCTCCCCCCC
CTCTCCTTTTTCTCTCCCTCAAATATTTTATTTTATTTTCCCCCCCTCCC
CCCCCCCCCCCCNNNNNNTTGTCCCCCCACATCCGTTTTCTCCAATCTTT
ATTTCTCATTTCATAAAATTATTTCTTTTTTTTTTTTTTACCCCCCCCCC
TTCTCTAGATTTGTTTATTTTATTAATCATTATCACGCTCTCCTCCTACC
TTCCAAAAAAACACAATTTTTTTCTACACCCATTATTCCCTCCCCCCTCA
CCCCTCCCTTCCCCTCCTCCTTTTTCCCTCTTATATTTTATTCTCTATTA
CATACCTCACATTTTTTACTCACTTCCTCCCCCTCCTCATTTCTTTTCCC
CCCCTCCCGAACCCTTTTTCACTTTTTACTCTTTTACTACACCTTTC
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGTCTTTCCACAGAGGCTGCCA
GGCTTAAGCCTTCTGATGGTTAGTTAGTAGAGCTGGTGTGGGTTCCTGGG
CCTGGCAGAGGGTTTCTGGGTGGGACATGTGAGTACTTCGGTGGATGCTT
CATGCCAACAGTGAACGAGGCTGTGGCTTTTCCTGCTGCCTGGCGTGAGA
TTCACCCTGTGACCTAAGAAGCTCTCAGAAGCAAACACTTGTGCAGGAGG
GGCACATCGGTTCAGGCGGCACCTCTCACAGGGATAGGCCAGGATGAACT
AGGTATTGTTTTTTTTCCCCCCCCGCCCCATGGACCTGGCTTCCAAAGTC
CTGTGACTATACCCGCTCCCCATTCTACTCCGGAAGGGCAAGACCCAGGA
AAGATAGGACATAATAGATGGGGTAAAACACTGTATACTTCCAGTAGATG
GACAGCAATGGGATATGAGTTTCCCTGCAGCTAAACCACGGAGGGAACCA
AGATTTCTCACGCTAATATTTTTTTGGAGCCAATGATATTGCTTAGCAGG
TAGACACTTGCAACCAAACCTGGCAGCCTGAGTCAGTCTCTAAGACCCAC
ACAGTGGGAGGAGAGAGCCAGTCCTCACAGACCATCCTTTGACTTCCCAC
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no208_f24.g1 MSMg01no208_f24.g1 CHROMAT_FILE:
MSMg01no208_f24.g1 PHD_FILE: MSMg01no208_f24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:32:10 2005
         (283 letters)



>mm_chr12_112927648_112928330
          Length = 683

 Score =  545 bits (282), Expect = e-160
 Identities = 282/282 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   caggtctttccacagaggctgccaggcttaagccttctgatggttagttagtagagctgg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 caggtctttccacagaggctgccaggcttaagccttctgatggttagttagtagagctgg 423

                                                                       
Query: 61  tgtgggttcctgggcctggcagagggtttctgggtgggacatgtgagtacttcggtggat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 422 tgtgggttcctgggcctggcagagggtttctgggtgggacatgtgagtacttcggtggat 363

                                                                       
Query: 121 gcttcatgccaacagtgaacgaggctgtggcttttcctgctgcctggcgtgagattcacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 gcttcatgccaacagtgaacgaggctgtggcttttcctgctgcctggcgtgagattcacc 303

                                                                       
Query: 181 ctgtgacctaagaagctctcagaagcaaacacttgtgcaggaggggcacatcggttcagg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 ctgtgacctaagaagctctcagaagcaaacacttgtgcaggaggggcacatcggttcagg 243

                                                     
Query: 241 cggcacctctcacagggataggccaggatgaactaggtattg 282
           ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 242 cggcacctctcacagggataggccaggatgaactaggtattg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 283
Length of database: 683
Length adjustment: 9
Effective length of query: 274
Effective length of database: 674
Effective search space:   184676
Effective search space used:   184676
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)