BAC Information

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BAC

Clone NameMSMg01-209B24
Chromosome12 (Build37)
Map Location 82,186,451 - 82,186,728
singlet/doubletsinglet
Overlap geneSmoc1
Upstream geneZfp36l1, Actn1, Wdr22, Exdl2, 2310002D06Rik, Galntl1, LOC100041715, Erh, Slc39a9, 3830431G21Rik, Gm1568, 4933426M11Rik, Sfrs5, Slc10a1
Downstream geneSlc8a3, LOC100042143, LOC100042148, EG214321, Hspe1-ps2, Adam4, 1810020G14Rik, Synj2bp, Adam21, Med6, Ttc9, LOC100041821, Map3k9, Pcnx
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209B24.T7 (MSMg01no209_b24.b1)MSMg01-209B24.TJ (MSMg01no209_b24.g1)
ACCAG391772AG391773
length727731
length of high quality
(start - end)
321 (45 - 365)280 (77 - 356)
definitionCHROMAT_FILE: MSMg01no209_b24.b1 PHD_FILE: MSMg01no209_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:09 2005CHROMAT_FILE: MSMg01no209_b24.g1 PHD_FILE: MSMg01no209_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:09 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCATGCTGTTTATCTTCTTCTAAGCATCCAAAGGCAAACCGCAGTAA
ATATTCATTAATTCGTTTAGTAGACAAATGTTGACTGAGCTCTCAAGATG
CCTGATACGGTGTTGTGCTGGTTGCAGATCTATTATGTGAGTCAAGGCAG
ACATGTTTCCTCCTCAGCCCTCAGCTAAAAAAAAATCTAGCAAAGGAGAC
TAGACCCAACTAATTAAAATCCATCTTAATAATTCCTATGAAGTAAAGGT
GTCAAACAGGAAACCTTGAGTTAATCTGAGTCAGGGCAGATCCTATGGAA
ACCATGCCTGATTGTTTTTTACCCCCCCCCACCTATTAGGCCAGGCTCCC
TACTTAACTCAATCTGGCCCCCCACGGAATTTGAACTCTGACCTTTTGCT
AGCTTCAAGTATTTGTACTAAATCTCACCAGGCAAAGGTCTCCAGGGTGA
ATCTGGGGCATCTGTCACCGTAACAAAGAAGGATACCCTTCCAGAGGTCA
ATTCTAAGTATTAAGTTCTTCAGTGTGGCTATGACAGAAATCCCAAGAGA
AAAACTTAAAGACGGAAGAATCCATTTTATTCACAGTTTTGGGGTGTCAG
CACAACATGTCATGTAAGGATACGATGGAGAAAAGCAATTCATATCTTGC
TTGACAAGAAACACAGAATGTGCTACA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGAGCAAGCAAGCTTGCCAGCT
AGACAGGCTGAAGTGACAAGCTCTGGGTTGAAGCAAGAGACTCTGCCTCA
GTATGTAATGTGGAGAGGAATACAGGAAAATATCCAGCAACCTTTAGCTG
CCTCCCCACTCAAATGCACTCCATGCACCTTTGCAAAAGACTAGAGAAAA
CCTGAGCAGTGGTCTTCAGACTTCTTGCAGATATCCAATCTTTCCTGTCA
GACGCTGGGGAATCTGTGATGATAATCATGTGTTGGGTGGTGTATGCATT
AGGGTGTGTAAAGGTATTGTTTAACCCCCCCCCCTGCCCCTTTGAACTAT
ATATATATATAGAATAACGCAAGCAACACATATACTTTTTTTCCATATAG
GGAGGGTATCATGTCTTATACTGCCCAGGCTGGTTTCCAACTTGTATATT
CCTGGCTCAGCCCCTAGAGTGCTCAGATTATAAGCACGAACCACTATATC
TAGCTGCAAAATATGTCTTTAAGACAAAGGCTTTTGTTTTTTTCCACGCT
AGAGCCAGAACCCAGGGCAACACATTGGTGAATGCTCTACCACCGACTTA
CACACTCAGTCCACAATGAAGCCCTTTCATCTTACTTTAACCCAGAGATC
CTTATGGGATCTACCAATAACCGAGAATTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_b24.g1 MSMg01no209_b24.g1 CHROMAT_FILE:
MSMg01no209_b24.g1 PHD_FILE: MSMg01no209_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:09 2005
         (280 letters)



>mm_chr12_82186251_82186928
          Length = 678

 Score =  514 bits (266), Expect = e-150
 Identities = 276/280 (98%), Gaps = 2/280 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcagagcaagcaagcttgccagctagacaggctgaagtgacaagctctgggttgaagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tcagagcaagcaagcttgccagctagacaggctgaagtgacaagctctgggttgaagcaa 260

                                                                       
Query: 61  gagactctgcctcagtatgtaatgtggagaggaatacaggaaaatatccagcaaccttta 120
           ||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaga--ctgcctcagtatgtaatgtggagaggaatacaggaaaatatccagcaaccttta 318

                                                                       
Query: 121 gctgcctccccactcaaatgcactccatgcacctttgcaaaagactagagaaaacctgag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 gctgcctccccactcaaatgcactccatgcacctttgcaaaagactagagaaaacctgag 378

                                                                       
Query: 181 cagtggtcttcagacttcttgcagatatccaatctttcctgtcagacgctggggaatctg 240
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cagtggtattcagacttcttgcagatatccaatctttcctgtcagacgctggggaatctg 438

                                                   
Query: 241 tgatgataatcatgtgttgggtggtgtatgcattagggtg 280
           ||||||||| ||||||||||||||||||||||||||||||
Sbjct: 439 tgatgataagcatgtgttgggtggtgtatgcattagggtg 478


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 280
Length of database: 678
Length adjustment: 9
Effective length of query: 271
Effective length of database: 669
Effective search space:   181299
Effective search space used:   181299
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)