BAC Information

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BAC

Clone NameMSMg01-209I12
Chromosome12 (Build37)
Map Location 93,462,086 - 93,462,367
singlet/doubletsinglet
Overlap genenone
Upstream gene4930534B04Rik, Tshr, Gtf2a1, Ston2, EG666955, LOC100039631, Sel1l, LOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209I12.T7 (MSMg01no209_i12.b1)MSMg01-209I12.TJ (MSMg01no209_i12.g1)
ACCAG392024AG392025
length701712
length of high quality
(start - end)
310 (46 - 355)285 (77 - 361)
definitionCHROMAT_FILE: MSMg01no209_i12.b1 PHD_FILE: MSMg01no209_i12.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:41 2005CHROMAT_FILE: MSMg01no209_i12.g1 PHD_FILE: MSMg01no209_i12.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:41 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAACACACCACTTTCATCAATGGACAGATTGTGGAAACAGAAACTA
AACAGGGACACATTGAAACTAACAGAAGTTATGAAACAAATAGATTTAAC
AGCTATCTGTAGAACATTTTATCTTAAAACAAAAGGAAATACCTTCTTCT
CAGCACCTCATGGTACCTTCTCCAAGGTTGACCATATAATTGGTCACAAA
ACAGGCCTCAACAGATACAAAAATATTGAAATTGTCCCATGCATCCTATA
AGATCACCGTGGACTAAGGCTGATCTTCAATACAACATAAATAATAGAAA
GCCAACATTTTCATGGACACCGCACCCACACTCTTCTCAATGATACCTTG
GTCAAGGAAGGATTAAAGAAAGAAATTAAAGACTTTTAGAGTTTGATGAA
AATGAAGCCACAACATACCAAAACTTATGGGTCACAATGAAAGCATTTCT
AAGAGGAAAACTCATAGCTCTTAGTGCCTCCAAAAAAAGAAACTTGAGAG
AGCACACACGAGTAGCTTAACAACACACCTAAAAGCTCTAGAACAAAAGG
AAGAAATTCACCCAGGACGAGTAGACAGCAGGAAATAATCAAACTCAGGG
GCAAAATCAACCAAGTGGATACTAGAAGAACTATTCAAAGAATCACCCAA
A
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCAGGAGCATGGCTCATAAAAAGG
AGAACATGACATTGCATTTTTAAAAAATTAACAGTGTTTGCTGTAAAAAA
AATTGTGTCGAGGGGATGAACAAAGTAAACCTCTCAAGGAAAGCCTGAGT
GAATGTACCTGGAAGTTTTCCATCTTGTTGTATACTGATACTCAGAATAA
AAATGCTTATGCCCCATAAAAATAGTCAAAGAGAAATTTAGGAGTTAGAC
TGCGACAGGAAAAGATATGTCAGTAGAGATAATATATGTGGGGTGGTGGT
TTGAATTTTTTTTTTCCCCCCACGCACCCCCCTTTCGAATGCTTCATAGA
ACTGTTTTGGGAAGGACCCCAAAAAAAAAAAATGTAGGGGTGGGCTTGGA
GTACGCTATGGAGATTCAAAACCTCACATATCACCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCACTCTCTCTCTCTTATTCTCTCTTTCTGATT
TTTTGTATTTCCCCCCTTGTCTTTACTTTTATTGTATATCCCCTTTAACA
TTACCTTCTTTTTTTTTTCCCCTCTCCTATTTTTCCCCTCTCTATTCTTA
TCCTTTACCCCCTTTCCCCCCTCTCTCCCCCCCCCCCTTTTTCCCTCCTT
TTTATGCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_i12.g1 MSMg01no209_i12.g1 CHROMAT_FILE:
MSMg01no209_i12.g1 PHD_FILE: MSMg01no209_i12.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:41 2005
         (285 letters)



>mm_chr12_93461889_93462572
          Length = 684

 Score =  501 bits (259), Expect = e-146
 Identities = 276/283 (97%), Gaps = 4/283 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   tcaggag---catggctcataaaaaggagaacatgacattgcatttttaaaaaattaaca 57
           |||||||   ||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 198 tcaggagatgcatggctcataaagaggagaacatgacattgcatttttaaaaaattaaca 257

                                                                       
Query: 58  gtgtttgctgtaaaaaaaattgtgtcgaggggatgaacaaagtaaacctctcaaggaaag 117
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 258 gtgtttgctgtaaaaaaa-ttgtgtcgaggggatgaacaaagtaaacctctcaaggaaag 316

                                                                       
Query: 118 cctgagtgaatgtacctggaagttttccatcttgttgtatactgatactcagaataaaaa 177
           |||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 317 cctgggtgaatgtatctggaagttttccatcttgttgtatactgatactcagaataaaaa 376

                                                                       
Query: 178 tgcttatgccccataaaaatagtcaaagagaaatttaggagttagactgcgacaggaaaa 237
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 377 tgcttatgccccataaaaatagtcaaagagaaatttaggagttagactgcgacaggaaaa 436

                                                      
Query: 238 gatatgtcagtagagataatatatgtggggtggtggtttgaat 280
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 gatatgtcagtagagataatatatgtggggtggtggtttgaat 479


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 285
Length of database: 684
Length adjustment: 9
Effective length of query: 276
Effective length of database: 675
Effective search space:   186300
Effective search space used:   186300
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)