BAC Information

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BAC

Clone NameMSMg01-209K10
Chromosome12 (Build37)
Map Location 99,017,768 - 99,018,050
singlet/doubletsinglet
Overlap genenone
Upstream geneEG628277, LOC382626, LOC100039743, LOC667732
Downstream geneLOC628351, LOC100039770, LOC667746, Galc, Gpr65, Kcnk10, Spata7, Ptpn21, Zc3h14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-209K10.T7 (MSMg01no209_k10.b1)MSMg01-209K10.TJ (MSMg01no209_k10.g1)
ACCAG392097AG392098
length710729
length of high quality
(start - end)
310 (44 - 353)284 (77 - 360)
definitionCHROMAT_FILE: MSMg01no209_k10.b1 PHD_FILE: MSMg01no209_k10.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:51 2005CHROMAT_FILE: MSMg01no209_k10.g1 PHD_FILE: MSMg01no209_k10.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:33:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCCTGTGTTATACCAAGGCTCAGTTTTCTCAAAGGGAACACATCGATCA
TTTGGCCTTACATTTCATATTAGGAACTGTACAGGAGGGACTGAAGTGCT
GGCTCAGTGTCTTAAAGTGCTAGCTGATCTTCCAGAGTACCAGGGTTTAG
TTCTCAGCACCTACTTGGTAGCCCACAGTCACATTCAACTGAAATTCCAG
GAGATCCAATGCTTTTCTGACCTCTGTTGGTACTGCACACAGGTAGTACA
TGTGCAGACATGTACGCTATGCATATCTATACATACAAATGTATCTAGAC
AAATTTTTGTATGCCCCACCCCCCCCAGACACACACCATTGCATAACTGT
CACCCATTTCTCAAAGCGCCTGAGAACCAGCTCCAGAAACACATCAGGTA
TGCAATGTCGTGTGTTTACTCTGAACAGGCTTGCTGCCTGTCATTTTCGT
CTCTCCTAGATTTTTTTTCTCATGTTGTTTATTTATTTTGACATAAGCAG
AAGCAATCTTGCAAGATAAATATTGTGCCATACAAACAGAAGGCTGTCAA
ATTTAACGAACAGAGAGAGAGAGAATAAAAAAAGACAAGACAGCTCTGGG
GAATCCAGAGGCCCCCAAATCAGCAGCTTTGAGAAAGAGGCAGCTTCTGG
CACATTCCTC
CGATTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTTTGGCTTTGGAACTCCTGCTCCG
ACTTCATTTCTTCTGGGAAATCTTTCAGTCTCCTCAGGCAAACTCATCAC
ATAGCCTTTTGATGCTTTGTTGGCGAGACGATTGGAGGTTGCCTCAGGGA
GGATTTACAGCTCCTAGAGTAGGTGCGATAGAGGGCTTATTGGTTTTACT
TGCAGTGAGTCATCTGTACTTTTGTAGGGGTTTTAGAAAAGGAGAAAAGA
GAACAAAAGTAGATTTTTTAGTTTCGGGATTAGTCATTTCTGTAAAGTCT
ATTATTTCAATTANGTACCGNGGACGTTACCACAATGAATTATGCATTGT
AATGACTAAATAGTGTGCCCAAAGATAATATTATTGGGGTTTGGCGGGGG
GGCCCCCCCTNCCTCCTCCTTTTCCTCTCCCCTCTCTGCCTTGGTTTGTT
CTCTCTGTGCTTGCTTTTTTCGCTGCGCGCGGCGCCGTGTTGCGCCCCTT
TTCCCCCCTCTCCGGTCTTTCTTTTTTCTTCCCCCCCTCTCGCTTCTCTT
CTTTTGCTTTTCGCGCTTTCGTGTTCGGTTCTGTCTTTTTTCCGCCCCCC
CCTTTCTTCCCTTTTCTTTTTTTCCCTTTCCCCTTTGTCGCCTTTTCCCC
GGGCCTGTTTTCCGTTTTTTGTTCTTTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no209_k10.g1 MSMg01no209_k10.g1 CHROMAT_FILE:
MSMg01no209_k10.g1 PHD_FILE: MSMg01no209_k10.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:33:51 2005
         (284 letters)



>mm_chr12_99017568_99018250
          Length = 683

 Score =  526 bits (272), Expect = e-154
 Identities = 281/284 (98%), Gaps = 1/284 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggctttggaactcctgctccgacttcatttcttctgggaaatctttcagtctcctca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 483 tttggctttggaactcctgctccgacttcatttcttctgggaaatctttcagtctcctca 424

                                                                       
Query: 61  ggcaaactcatcacatagccttttgatgctttgttggcgagacgattggaggttgcctca 120
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 423 ggcaaactcatcacatagccttttgatgctttgttggtgagacgattggaggttgcctca 364

                                                                       
Query: 121 gggaggatttacagctcctagagtaggtgcgatagagggcttattggttttacttgcagt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 363 gggaggatttacagctcctagagtaggtgcgatagagggcttattggttttacttgcagt 304

                                                                       
Query: 181 gagtcatctgtacttttgtaggggttttagaaaaggagaaaagagaacaaaagtagattt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 303 gagtcatctgtacttttgtaggggttttagaaaaggagaaaagagaacaaaagtaga-tt 245

                                                       
Query: 241 tttagtttcgggattagtcatttctgtaaagtctattatttcaa 284
           ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 244 tttagtttcgggattagtcatttttgtaaagtctattatttcaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 683
Length adjustment: 9
Effective length of query: 275
Effective length of database: 674
Effective search space:   185350
Effective search space used:   185350
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)