BAC Information

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BAC

Clone NameMSMg01-211J20
Chromosome12 (Build37)
Map Location 113,082,827 - 113,181,463
singlet/doubletdoublet
Overlap genePpp1r13b, LOC100041886
Upstream gene2810455K09Rik, LOC100041649, 2810452K22Rik, 4930573I19Rik, Ankrd9, 6030440G07Rik, Rcor1, 4930595D18Rik, Traf3, Amn, Cdc42bpb, A230065H16Rik, 1200009I06Rik, Tnfaip2, Gm266, Eif5, Mark3, Ckb, 6720458F09Rik, Bag5, 2810002N01Rik, Klc1, Xrcc3, Zfyve21
Downstream gene2010107E04Rik, BC048943, Tdrd9, A530050D06Rik, Kif26a, A730018C14Rik, A530016L24Rik, Tmem179, 2610204M08Rik, Adssl1, Siva1, Akt1, EG382639, AW555464, LOC382640, Pld4, AI450948, LOC100041194, BC022687, Cdca4, Gpr132, Jag2, Nudt14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-211J20.T7 (MSMg01no211_j20.b1)MSMg01-211J20.TJ (MSMg01no211_j20.g1)
ACCAG393268AG393269
length712708
length of high quality
(start - end)
320 (36 - 355)248 (56 - 303)
definitionCHROMAT_FILE: MSMg01no211_j20.b1 PHD_FILE: MSMg01no211_j20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:54 2005CHROMAT_FILE: MSMg01no211_j20.g1 PHD_FILE: MSMg01no211_j20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:36:54 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(113,082,827 - 113,083,133)(113,181,216 - 113,181,463)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATAA
TACCATCCTAGAACACACCCTCACTCAGACTTGACTAGCTTTTCCAGAGA
AGAATATATAATTAAAAACCCCAGTTAACCCAGCGAGCTCTTTGCTGCAG
GTGAGAGTTAAGGGTTAGAAACGTGCAGTGCCATTTGGGATTGTGACCGG
GACTGCCCTGACTTGGCCCGGGTGTGGGCCCAGGCCCGCATGCAGCACAT
ACACAGATTGCCATTCATGATCTTGCTGTAGTCAACTTGTCCTCTCATGG
CCCGGATCTTCTTCAGCTTGTTTTCCTGGGCTTCAACTCGCTCTTTCAGT
TTCNGTAGTTTTCNATTCTAGCACCGGACTGCTGCTGGCGGCGCTCCTGT
TGCTTTACACAATGTAAACGATAGATCCTATCACGAATGAGAACCATAAG
CTTTGCAGGTAGAAACTTAAGGTTACTTTTATACATGAAACAAACAGACT
AACTGAGTGCACCCTATAGCATCACCTACTAAAGAACACTGAATGAATTC
TGCTCACGTCAGATCTTTCCCCACTGACAATATTGGTGTCCATATGTGTG
AGACGACGTGAGTCCGGGTATTCTTATTTTATATCTGATTACGTGCGCTT
CTCTGTATTCTTCGCTATGCCCTTTTCTTTGCTGAACGTCCCCGCCAGTT
ACCTTTGCCTGT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXCTGTTGCTCATGCACGCTTCTGGCTTCTTTTTCGGTTCTAGGTAC
AAGCTGTTGTCATGAAGCCTGGAGTTTTTCCGAGATGCCAGAGGCAGCAG
CGCAGTGCTCTTGTTTCTCATCTAAACCTGTCCCTTTCTCAGAACAGAGC
CCGCGTGTGTGATTCCTTCGTGGTCCCAGAGCGGGTCATCTTGCTTGCAG
GGTAGCCTTGGGGCACCACTGCTTGTCAGGGTTGAGCAGAAAGGCAGACC
AGAATCCTCTGAGTCCCCCTCCCACTTCCAGCTGGTTGACTGATANTTCA
CCCCANAAGCAGGAACCTGAGGAGGAAGAAGGCCTGAGAAACTGGAGGGA
GGCTGCTCAAAAAGAAAAGTAGAATGGTCTAGAATACCTAGAAAAAAAAA
AATAAAGCACCCAACAGGCTGAAGCAAGGAAATTACTGTAGGTAGTGAGT
CTCTTGGCCAGCATGGGCTACATGGGTGTAACTCTGCATAGAATAACCAA
CCAACCAACCAATCACCAAGGCTGGAAAACTGGCTTGCCAGCTAAGGGCC
AGTCCTGCTTCTTGTAGAGGACCCAAGCTTACTGCCCAGTATCTCCCCCG
GTTGTTCCACAACCCCCTGCATCTCTGTAGAATATAACAACCTCTTTTTC
CTGCGCGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no211_j20.b1 MSMg01no211_j20.b1 CHROMAT_FILE:
MSMg01no211_j20.b1 PHD_FILE: MSMg01no211_j20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:54 2005
         (320 letters)



>mm_chr12_113082616_113083335
          Length = 720

 Score =  594 bits (307), Expect = e-174
 Identities = 307/307 (100%)
 Strand = Plus / Plus

                                                                       
Query: 12  ataataccatcctagaacacaccctcactcagacttgactagcttttccagagaagaata 71
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 212 ataataccatcctagaacacaccctcactcagacttgactagcttttccagagaagaata 271

                                                                       
Query: 72  tataattaaaaaccccagttaacccagcgagctctttgctgcaggtgagagttaagggtt 131
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 272 tataattaaaaaccccagttaacccagcgagctctttgctgcaggtgagagttaagggtt 331

                                                                       
Query: 132 agaaacgtgcagtgccatttgggattgtgaccgggactgccctgacttggcccgggtgtg 191
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 agaaacgtgcagtgccatttgggattgtgaccgggactgccctgacttggcccgggtgtg 391

                                                                       
Query: 192 ggcccaggcccgcatgcagcacatacacagattgccattcatgatcttgctgtagtcaac 251
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 392 ggcccaggcccgcatgcagcacatacacagattgccattcatgatcttgctgtagtcaac 451

                                                                       
Query: 252 ttgtcctctcatggcccggatcttcttcagcttgttttcctgggcttcaactcgctcttt 311
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 ttgtcctctcatggcccggatcttcttcagcttgttttcctgggcttcaactcgctcttt 511

                  
Query: 312 cagtttc 318
           |||||||
Sbjct: 512 cagtttc 518


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 320
Length of database: 720
Length adjustment: 9
Effective length of query: 311
Effective length of database: 711
Effective search space:   221121
Effective search space used:   221121
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no211_j20.g1 MSMg01no211_j20.g1 CHROMAT_FILE:
MSMg01no211_j20.g1 PHD_FILE: MSMg01no211_j20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:36:54 2005
         (248 letters)



>mm_chr12_113181016_113181663
          Length = 648

 Score =  480 bits (248), Expect = e-140
 Identities = 248/248 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctgttgctcatgcacgcttctggcttctttttcggttctaggtacaagctgttgtcatga 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 448 ctgttgctcatgcacgcttctggcttctttttcggttctaggtacaagctgttgtcatga 389

                                                                       
Query: 61  agcctggagtttttccgagatgccagaggcagcagcgcagtgctcttgtttctcatctaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 agcctggagtttttccgagatgccagaggcagcagcgcagtgctcttgtttctcatctaa 329

                                                                       
Query: 121 acctgtccctttctcagaacagagcccgcgtgtgtgattccttcgtggtcccagagcggg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 acctgtccctttctcagaacagagcccgcgtgtgtgattccttcgtggtcccagagcggg 269

                                                                       
Query: 181 tcatcttgcttgcagggtagccttggggcaccactgcttgtcagggttgagcagaaaggc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 tcatcttgcttgcagggtagccttggggcaccactgcttgtcagggttgagcagaaaggc 209

                   
Query: 241 agaccaga 248
           ||||||||
Sbjct: 208 agaccaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 248
Length of database: 648
Length adjustment: 9
Effective length of query: 239
Effective length of database: 639
Effective search space:   152721
Effective search space used:   152721
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)