BAC Information

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BAC

Clone NameMSMg01-212G21
Chromosome12 (Build37)
Map Location 95,864,430 - 95,864,715
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212G21.T7 (MSMg01no212_g21.b1)MSMg01-212G21.TJ (MSMg01no212_g21.g1)
ACCAG393789AG393790
length633725
length of high quality
(start - end)
196 (41 - 236)287 (67 - 353)
definitionCHROMAT_FILE: MSMg01no212_g21.b1 PHD_FILE: MSMg01no212_g21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:11 2005CHROMAT_FILE: MSMg01no212_g21.g1 PHD_FILE: MSMg01no212_g21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:11 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
AATATATTCCCGCAACGTGCCCTTTACACTGAGATTGCTTAGCAATACTC
ACTGTGATTTTTGAAATGATTGTATTTAGGTTGTTCACTTTTGTTTGTTT
GTTTGCTTGTTTTTTGGATGTTTGGTTTTGTTTTTTCCAGTCACAGTTTC
TTTGTGTAGCCCTGCACGTCCTGTAACTCTCTGTAAATCAGGCCATTCTT
CGAAGCTGAAATCCTGTTTTGGCCCCCTACCCTCCCCAAAGGGGTTTGGG
AAATTAAAAAAGGGTGTTATATAGACACCCCCGCAAACCCCCAAGTTTTT
ATGGCTAATTCACAAAAATTTTTTTTTTTTTATAAAAACTCCACTCAAAA
AAAATTTTTATTTGTTTCCTTTTTTTTTTCCCAATACATAAACAACACAA
ATGTTTTCCATCTCTTTCTTTCTCCCCCCCCTTTTTAAAAAAAAAAAAAA
AGGTGGCTAAACCTTTTCTTTCTAAAAACATTTTTTTTTTTTCTTTCTCC
CCCATACAGACACCTATGACATAACACCCCCCCCCCCCCCTCCCTCCCCT
CGCTTTATTTTTTTTTTACTTCTCATTAAGACG
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTGTGGATAGTATTATTTTTCAGTATTCCTCGTTG
GGTACATAACAAGTGACTAGGGATACCAATGTAAGAACTGTGCCTAGATG
ATGCTTATTAAGATGAGTTATGTATAAATGACTATCAATGGGCCCTCTCA
GGATTGTTTTTCAGTCTTTACTGGGAGCTCTTACTTATCCAAAGGTCATT
TGACTTCATTTCACTAACTCACTTTACTCACAATACAGAATCCAGATTGA
AGAAATATATCTTATTAATAGCTTACATATGGAATTATGAGAAGAATAGG
TGTCTTATATCATACTCACCTCGTCCCTAATGGTTATATTCTGTAGGAAT
ATTCCAGGAACATTTTGGTTTATAGGAAACCCAAAACAGCTAGGTTTTGA
CATCCCCTGGTTTGTGTTGTCATTATCAAATCCAACAAACATCACGTGGA
GAGCCAGAGACTGTCTACAAAGGAAAGAACACAGTTTGGCTCCAATGATA
TGTCATTAATAATTATTGATAGCAAATTGAATACTGCTTTGTTGTCTGAC
CCTTTAAACATGGTTTTGTTCAATATCAAAACAGATAGACCTGTTATCTT
TTTTTTTTCATTTTATATTAGGTATTTAGCTCATTTACATTTCCAATGCT
ATACCAAAAGTCCCCCATACCCACC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_g21.g1 MSMg01no212_g21.g1 CHROMAT_FILE:
MSMg01no212_g21.g1 PHD_FILE: MSMg01no212_g21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:11 2005
         (287 letters)



>mm_chr12_95864230_95864916
          Length = 687

 Score =  491 bits (254), Expect = e-143
 Identities = 278/286 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgtggatagtattatttttcagtattcctcgttgggtacataacaagtgactagggatac 60
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 486 tgtggatagtattatttttcagtattccttgttgggtacataacaagtgactagggatac 427

                                                                       
Query: 61  caatgtaagaactgtgcctagatgatgcttattaagatgagttatgtataaatgactatc 120
           |||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||
Sbjct: 426 caatgtaagaactgtgcctagaagatgcttattaagaggagttatgtataaatgactatc 367

                                                                       
Query: 121 aatgggccctctcaggattgtttttcagtctttactgggagctcttacttatccaaaggt 180
           ||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||
Sbjct: 366 aatgggccctcgcaggattgttttccagtctttactgggagctcttacttgtccaaaggt 307

                                                                       
Query: 181 catttgacttcatttcactaactcactttactcacaatacagaatccagattgaagaaat 240
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 catttgacttcattttactaactcactttactcacaatacagaatccagattgaagaaat 247

                                                         
Query: 241 atatcttattaatagcttacatatggaattatgagaagaataggtg 286
           ||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 246 atatcttattaatagcttatatatggaattatgagaagaataggtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)