BAC Information

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BAC

Clone NameMSMg01-212O09
Chromosome12 (Build37)
Map Location 92,922,486 - 93,050,200
singlet/doubletdoublet
Overlap geneSton2, EG666955, LOC100039631, Sel1l
Upstream geneDio2, LOC100039295, 4930544I03Rik, 4930534B04Rik, 5430427M07Rik, Tshr, Gtf2a1
Downstream geneLOC100039367, EG432681, LOC667589, LOC100039387, LOC100039425, LOC628116
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-212O09.T7 (MSMg01no212_o09.b1)MSMg01-212O09.TJ (MSMg01no212_o09.g1)
ACCAG394087AG394088
length717717
length of high quality
(start - end)
313 (373 - 685)279 (69 - 347)
definitionCHROMAT_FILE: MSMg01no212_o09.b1 PHD_FILE: MSMg01no212_o09.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:47 2005CHROMAT_FILE: MSMg01no212_o09.g1 PHD_FILE: MSMg01no212_o09.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:38:47 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(92,922,486 - 92,922,798)(93,049,923 - 93,050,200)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXCCAAAGAGGATCCGCGGAATTCC
AGAATCCCCAAAACAGCACAATAGAGGAGACAGCTCTACTAGGAAATGCC
TGAAGGCTTCTTCCCAGAAAAAACCTCAAGTGGGAAGGGGGAGCACGTTT
AACTTTCTCAAAAACCCAGCTGCCTTGAGCGAATCGCCTGACTCTGACTT
ATTAACGTAAGCCTAGTTTTCACCTGCCGGATAGGGTCAATGCTTATCAT
ACCAAGCACCGAGAGTGCGACACACCAGAGGATAATAAGAGATGGGGAGA
TCACCATGAATAATCCTTGGGAAAGCCAACTTAATCAAGCACTGCATCCT
ATTTGTTTCAATCCCCCAGCCTGGGTCACTAAAGCACCAACAGGAAGAGT
CAACTACTCCCTTCCAAAACGCATTCTGTCCCAGAGTTCCGGATCTGGGA
TAGAGGCAGGTTTGACAGGGAGAGTGATGTAATTTTACCAGAAGGTGAAG
TACCCAGTGTGTGAATGCTTAACAGAGCCAGAAAGGCTCTCAGTGCTAAG
CGCCGTCTGGGTTGGCTTGGTACTCGTCCATTTGGCTCTTTGTCATAATT
GGACAGTCATGGATTTAAACTTGTAATTTCCAGGTAAAACCACTCCGCCA
CAGGGTTTCTCACTTCCGCTTCTCAACCACTTGGCGTGGAAACAAGTGCC
ATCCTTGGATCAGAAGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTCGTGGGTAGCCTGTGGAGCAGGCAGGAGCG
CAGTTTTCCCGTGGCATTTCTCAGAGCTCTCAACACGGAAGCAGGTGGCA
TCGGTGCAGGTGGTTTCTGGTTCAGGGAAAACAGACGTAACTCGTGACAC
TCTGAACCAGTAGTAAGCATTACGTCAGACGAATCCCTGGCAACAACTCG
GGCCAGTACCCTAAGAAGACTAAGCTAGAGGGAAGCCGGTATGCTGGTTC
ACTGTGTATCTGATGGTTCTCAGTGCCACACAGTTAGCACGATAACTCTT
TTTTTTGTTCCGANACGNACCACCTGCTTAAGTGGGCTGATGGAACCTAA
AGAGCACCCCAGATAAAAGAACCCCTCATAGCTACCACCTGGAGAAACAA
GGCTTACGTGGAAGTGCCCGTGGGCTCTACCACTTAGACTTTGCTCCTGT
CCCCATATTCTCTGAAGTGGATTCACCGGTGCAGAATTTTGCTCCATAAA
TACTATGATGCTCGAATTTGTTGTTGGAGCCATCATTAGGGCCAAATTGT
CCTTATGCCCAATTATAATTTAGCAATGCTTTCTTAGATCTACTCTAACA
TATACAGTGCGACTTCCATCCCTTGCCCTTATCCACCCTATTGAGATCTT
CTCCACAGTTTTCCATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no212_o09.b1 MSMg01no212_o09.b1 CHROMAT_FILE:
MSMg01no212_o09.b1 PHD_FILE: MSMg01no212_o09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:47 2005
         (313 letters)



>mm_chr12_92922286_92922998
          Length = 713

 Score =  574 bits (297), Expect = e-168
 Identities = 309/313 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggtcactaaagcaccaacaggaagagtcaactactcccttccaaaacgcattctgtccc 60
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 gggtcactaaagcaccaacaggaagagtcaactactctcttccaaaacgcattctgtccc 260

                                                                       
Query: 61  agagttccggatctgggatagaggcaggtttgacagggagagtgatgtaattttaccaga 120
           |||||||||| ||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agagttccgggtctggaagagaggcaggtttgacagggagagtgatgtaattttaccaga 320

                                                                       
Query: 121 aggtgaagtacccagtgtgtgaatgcttaacagagccagaaaggctctcagtgctaagcg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aggtgaagtacccagtgtgtgaatgcttaacagagccagaaaggctctcagtgctaagcg 380

                                                                       
Query: 181 ccgtctgggttggcttggtactcgtccatttggctctttgtcataattggacagtcatgg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ccgtctgggttggcttggtactcgtccatttggctctttgtcataattggacagtcatgg 440

                                                                       
Query: 241 atttaaacttgtaatttccaggtaaaaccactccgccacagggtttctcacttccgcttc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttaaacttgtaatttccaggtaaaaccactccgccacagggtttctcacttccgcttc 500

                        
Query: 301 tcaaccacttggc 313
           |||||||||||||
Sbjct: 501 tcaaccacttggc 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no212_o09.g1 MSMg01no212_o09.g1 CHROMAT_FILE:
MSMg01no212_o09.g1 PHD_FILE: MSMg01no212_o09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:38:47 2005
         (279 letters)



>mm_chr12_93049723_93050401
          Length = 679

 Score =  476 bits (246), Expect = e-139
 Identities = 270/278 (97%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctcgtgggtagcctgtggagcaggcaggagcgcagttttcccgtggcatttctcagagct 60
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 ctcgtgggtaacctgtggagcaggcaggagcgcagttttcccgtggcatttctcagagct 419

                                                                       
Query: 61  ctcaacacggaagcaggtggcatcggtgcaggtggtttctggttcagggaaaacagacgt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 ctcaacacggaagcaggtggcatcggtgcaggtggtttctggttcagggaaaacagacgt 359

                                                                       
Query: 121 aactcgtgacactctgaaccagtagtaagcattacgtcagacgaatccctggcaacaact 180
           |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||
Sbjct: 358 aactcgtgacactctgaaacagtagtaagcattacgtcagacggatccctggcaacaact 299

                                                                       
Query: 181 cgggccagtaccctaagaagactaagctagagggaagccggtatgctggttcactgtgta 240
           | | ||||||||||||||||||||||||||||||||||||| | |||| |||||||||||
Sbjct: 298 cagaccagtaccctaagaagactaagctagagggaagccggcacgctgattcactgtgta 239

                                                 
Query: 241 tctgatggttctcagtgccacacagttagcacgataac 278
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 238 tctgatggttctcagtgccacacagttagcacgataac 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 279
Length of database: 679
Length adjustment: 9
Effective length of query: 270
Effective length of database: 670
Effective search space:   180900
Effective search space used:   180900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)