BAC Information

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BAC

Clone NameMSMg01-213C13
Chromosome12 (Build37)
Map Location 50,599,040 - 50,599,358
singlet/doubletsinglet
Overlap genenone
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1, EG665036, LOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424
Downstream geneLOC665071, LOC665077, LOC100039455, Prkcm
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213C13.T7 (MSMg01no213_c13.b1)MSMg01-213C13.TJ (MSMg01no213_c13.g1)
ACCAG394250AG394251
length741725
length of high quality
(start - end)
323 (37 - 359)292 (67 - 358)
definitionCHROMAT_FILE: MSMg01no213_c13.b1 PHD_FILE: MSMg01no213_c13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:07 2005CHROMAT_FILE: MSMg01no213_c13.g1 PHD_FILE: MSMg01no213_c13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:07 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCATAT
GGAAATAAAGTTGCAGACAAAAAGCAGATAAAACAAGAGAAAGTTTATCT
AGGGTTAGAAAATATACAAGTGTATATTATGAGTACTAGAGATGTTATGC
CACCATATGCCTCAATGTGACAGAAGAAGGACACGGCAGCACCTGATTTG
GTTTGCTACCCCCCCCCCCCCCGAAAAGAAGAGACACAGTAACAAAGTGT
GATATAAGGTCTTAGAATAGACCTTGGGCCAGAAAAAAAGAGAGTTAATA
GAAATCTGGGATGATTCTAATGTAGTGTATACAGCAGGTAATTATGTTCT
CATTGTTGTATTCTCTGCCCCCCAACCGGTGCTGTCTCTAAATGATACAA
GAATTATGGGAACCGACAAAGGTAGTATTTTGTAGCTCGTGCATTTCCAA
AAATATTAGTAGAAGTAAGACCCTAATGAACTTCCCTTACCTTAATCCTG
TTGTTTTTTTTTTTTTTTTGACAAAATTCCTCTGTGCATCAAGTATAGCT
CCCGGGCCCTCGAAACCAATTGTTAGGTGGTTATTGTTAAATATATGTTT
CCCCTACTCGGTCAACCTAGTTCTCTCTCCCAACCGGACCTTTCTACACG
TATATAATTGTCCTTATTACTTAGTCTATATGGTACACGCCATTCTACAT
GGTGCATATTATACTATATTCACGATACAATATGCGAATAT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXCTAGAGACTAAGCCACCAACTGAAGAGCATACCT
GGGCTGATCCGAGGTCAACCCCTCCCTCTTCCTAGGCTATTAGTGGGAAT
GAATATGCCTAATCATTTAGGGACTTGATGCCCAAGGAAGGAGGATATAG
GGAAATGGGTAGGGTAGAGGTAGGGGAAACACCCTCTCAGAGGCAAAGCG
GAGGAAGATGGATCAAAGAACTCTGGGAAGGGGACTTGGATGGGGAGTCA
ATATTTGGAATGTATATAAATAAAATAATTAATTTTAAAAACTTAGAACT
TTCTATTTTTGTTTGACCCCCCCCCCCAACATCCCAAACGCATTGTAAAC
ATATCATTCTATGCCCCAAGTTCATATCACTAAGTGCCTATATAAAAAAT
TTTAAGAGTTTAGTTTCCAAATTCTGCTGAGACTAGTCTGCACAGATGAG
TGTGAACTACAGAAGCTAATAGCTTCTGGGACAGGCAGAAGCCACAGAGC
TTATAAGGTAGACCTCTTTTTCAGGTTCCAGACATCTGGGCACCTTCCCT
GCCAGAGAAGAGGTTTTATGCCCCACCCGGGAGGGCTTTGCCTCAGCACC
TGGGGGAGCCATCTTGGTTCCTGGAATCCACCTATACTAGTCTGTGCTTG
TTAAAATGTAAACTACTGAAACTAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_c13.b1 MSMg01no213_c13.b1 CHROMAT_FILE:
MSMg01no213_c13.b1 PHD_FILE: MSMg01no213_c13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:07 2005
         (323 letters)



>mm_chr12_50598836_50599558
          Length = 723

 Score =  542 bits (280), Expect = e-158
 Identities = 310/320 (96%), Gaps = 2/320 (0%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcatatggaaataaagttgcagacaaaaagcag-ataaaacaagagaaagtttatc 63
           |||||||| ||||| |||||||||||||||||||| | ||||||||||||||||||| ||
Sbjct: 205 gaattcatgtggaactaaagttgcagacaaaaagc-gtataaaacaagagaaagtttgtc 263

                                                                       
Query: 64  tagggttagaaaatatacaagtgtatattatgagtactagagatgttatgccaccatatg 123
           ||||||||||||||||| | |||||||||||||||||||||||||||| |||||||||||
Sbjct: 264 tagggttagaaaatatagacgtgtatattatgagtactagagatgttaagccaccatatg 323

                                                                       
Query: 124 cctcaatgtgacagaagaaggacacggcagcacctgatttggtttgctaccccccccccc 183
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 324 cctcaatgtgacagaagaaggacaaggcagcacctgatttggtttgctaccccccccccc 383

                                                                       
Query: 184 cccgaaaagaagagacacagtaacaaagtgtgatataaggtcttagaatagaccttgggc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 384 cccgaaaagaagagacacagtaacaaagtgtgatataaggtcttagaatagactttgggc 443

                                                                       
Query: 244 cagaaaaaaagagagttaatagaaatctgggatgattctaatgtagtgtatacagcaggt 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cagaaaaaaagagagttaatagaaatctgggatgattctaatgtagtgtatacagcaggt 503

                               
Query: 304 aattatgttctcattgttgt 323
           ||||||||||||||||||||
Sbjct: 504 aattatgttctcattgttgt 523


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 323
Length of database: 723
Length adjustment: 9
Effective length of query: 314
Effective length of database: 714
Effective search space:   224196
Effective search space used:   224196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)