BAC Information

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BAC

Clone NameMSMg01-213C14
Chromosome12 (Build37)
Map Location 50,074,468 - 50,246,364
singlet/doubletdoublet
Overlap geneEG665036
Upstream geneGm1818, GA_x5J8B7W54VK-284379-285078, Olfr1399-ps1
Downstream geneLOC100039366, Foxg1, ENSMUSG00000045946, LOC100039424, LOC665071, LOC665077, LOC100039455
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213C14.T7 (MSMg01no213_c14.b1)MSMg01-213C14.TJ (MSMg01no213_c14.g1)
ACCAG394252AG394253
length727723
length of high quality
(start - end)
315 (35 - 349)296 (66 - 361)
definitionCHROMAT_FILE: MSMg01no213_c14.b1 PHD_FILE: MSMg01no213_c14.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:07 2005CHROMAT_FILE: MSMg01no213_c14.g1 PHD_FILE: MSMg01no213_c14.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(50,074,468 - 50,074,776)(50,246,073 - 50,246,364)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGTCAG
GGGAAAAATTTTTGAAAAAGGAATAAACAAATACAGACTAGAAATAGAAG
TAATAAACTATCCTTCTTTAACATGATGTTTGTCTATATAGAAAATGCAA
AGTACTTTTTTATTAGATATTTTCTTTATTTACATTTCAAATGCTATTCC
AAAATTTCCCTATACACTCCCCCCACCCTGCTCCCCTACCCACCTACTCC
CACTTCTTGGCCCTGGCATTCCCCTGTACTGGGGCATATAAAGTTTGCAA
GACCAAGGGTCCTAGGAAAAGGAAAGAAAGAAAGAAAAAAAGAAAGAGAG
ATTTTTTTAAACACCCCACCACCCAAAGAAAGAAAGAAAGAAAGAAAGAA
AGAAAGACCCCCCCCCAGAAAGAAAGAAAGATTGATCGAATGAAAGAAAG
AAAGAAAGAAAGAATCCAAAGTACTGTATGAGAGAAACTCCCCTGAACCG
AAAATGGGTAATGTGCAGCTACAGTATTAGCATGCCAAACAACCTGTATT
GTTAGACACAGTATTTATAATTACTTCTAAAATCTTTCTATTAAAAAAAT
CCATGTTAGTCTCCTGTAGGCAAGCAGTTCTTGGCATCCACAATAGTGTC
TGGTTTAGGTGACTGCTTATGGGATGGATCCATCATCTTGAGTAGCCTCT
AAATGGCTTTCCTTCAGCCTTTGCTCC
GAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXCATATGGGTTTTTCATAGGTTTTTGTATGTATATG
TTTTGGAGATTTTTACACTAGTAAATTTTATGTGACCTTCTCAAAAGGAC
ATTGGTGTGAGCTATTCCTCTGTATATTCCCTCTTCTATCATATCCTCAC
ATTCACCACCTCCTTTAATTCTCCCTGTTATATGATTCATCTTCCTCCAT
TTATATCACTGTATTCTATCTCCAAAATTTACCATACCCCCTACTAAGCC
CCTCACCACTACTGAAATAACAATAGAGAAATCATTTAATATCTAAATCA
TCCTTTTTTTTTTGGCGCCCCCCACCCCGTCATCCCACCTTTCAACTTGG
GTTCTATAAATGCCCCACCCCAAAAATGACTTTCCGAGCCTAGTTTATTT
CCATTTTTTAGTTATGCCCCTTTTCTATAACTTTCATGCCTTCTGTTTTC
TTTGCTGGTAGGCATGCACATGTAGCTTCTTGTCAGTGGAGGTGTACTTA
TATGGGGACTTACTACTTATTTTTGTATGCTTGCAGGTGGAAGTCTTAAG
ACCACCACTGTTGTTATTCCTTATTTGTCATCAAACTCTTGTTTTTTGAG
ACAGGTTCTCTTACTGGTATGAGGTTCCTGATTTATATTAGATTGTCCGT
ATTTCCTGCCCCATTAATTCTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_c14.b1 MSMg01no213_c14.b1 CHROMAT_FILE:
MSMg01no213_c14.b1 PHD_FILE: MSMg01no213_c14.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:07 2005
         (315 letters)



>mm_chr12_50074264_50074978
          Length = 715

 Score =  551 bits (285), Expect = e-161
 Identities = 303/309 (98%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcagtcaggggaaaaatttttgaaaaaggaataaacaaatacagactagaaataga 64
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagtcaggggaaaaatttttaaaaaaggaataaacaaatacagactagaaataga 264

                                                                       
Query: 65  agtaataaactatccttctttaacatgatgtttgtctatatagaaaatgcaaagtacttt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 agtaataaactatccttctttaacatgatgtttgtctatatagaaaatgcaaagtacttt 324

                                                                       
Query: 125 tttattagatattttctttatttacatttcaaatgctattccaaaatttccctatacact 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 325 tttattagatattttctttatttacatttcaaatgctattccaaaatttccctataccct 384

                                                                       
Query: 185 ccccccaccctgctcccctacccacctactcccacttcttggccctggcattcccctgta 244
           |||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 ccccctgccctgctcccctacccacctactcccacttcttggccctggcattcccctgta 444

                                                                       
Query: 245 ctggggcatataaagtttgcaagaccaagggtcctaggaaaaggaaagaaagaaagaaaa 304
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 445 ctggggcatataaagtttgcaagaccaaggggcctaggaaaaggaaagaaagaaagaaaa 504

                    
Query: 305 aaagaaaga 313
           ||| |||||
Sbjct: 505 aaaaaaaga 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space:   216036
Effective search space used:   216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no213_c14.g1 MSMg01no213_c14.g1 CHROMAT_FILE:
MSMg01no213_c14.g1 PHD_FILE: MSMg01no213_c14.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:07 2005
         (296 letters)



>mm_chr12_50245873_50246568
          Length = 696

 Score =  549 bits (284), Expect = e-161
 Identities = 290/292 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   catatgggtttttcataggtttttgtatgtatatgttttggagatttttacactagtaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 catatgggtttttcataggtttttgtatgtatatgttttggagatttttacactagtaaa 433

                                                                       
Query: 61  ttttatgtgaccttctcaaaaggacattggtgtgagctattcctctgtatattccctctt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ttttatgtgaccttctcaaaaggacattggtgtgagctattcctctgtatattccctctt 373

                                                                       
Query: 121 ctatcatatcctcacattcaccacctcctttaattctccctgttatatgattcatcttcc 180
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 372 ctatcatatcctcacattcaccatctcctttaattctccctgttatatgattcatcttcc 313

                                                                       
Query: 181 tccatttatatcactgtattctatctccaaaatttaccataccccctactaagcccctca 240
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 312 tccatttatatcactgtattctatcaccaaaatttaccataccccctactaagcccctca 253

                                                               
Query: 241 ccactactgaaataacaatagagaaatcatttaatatctaaatcatcctttt 292
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 ccactactgaaataacaatagagaaatcatttaatatctaaatcatcctttt 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)