BAC Information

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BAC

Clone NameMSMg01-213H01
Chromosome12 (Build37)
Map Location 47,227,995 - 47,228,294
singlet/doubletsinglet
Overlap genenone
Upstream genenone
Downstream geneLOC664952, Nova1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213H01.T7 (MSMg01no213_h01.b1)MSMg01-213H01.TJ (MSMg01no213_h01.g1)
ACCAG394432AG394433
length727727
length of high quality
(start - end)
636 (41 - 676)300 (72 - 371)
definitionCHROMAT_FILE: MSMg01no213_h01.b1 PHD_FILE: MSMg01no213_h01.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:28 2005CHROMAT_FILE: MSMg01no213_h01.g1 PHD_FILE: MSMg01no213_h01.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGATTCC
TGATCTTTCCAAGACTTTTATCATGAATGGGTGTTGGATTTTGTCAAATG
CTTTCTCCGCATCTAAGGCCAAATCTAAGTGGATCAAGGAGCTCCACATA
AAACCAGAGACACTGAAACTTGTAGAGGAGAAAGTGGGGAAAATCCTCCA
AGATACTGGCACAGGGGAAAAATTCCTGAATAGAACAGCAATGGCTTGTG
CTGAAAGATCGAGAATTGACAAATGGGACCTCATGAAACTGCAAAGCTTT
TGTAAGGCAAAAGACACTGTCAATAAGACAAAAAGGCTACCAACAGATTA
GGAAAGGATCTTTACCTATCCTAAATCAGATACGGGACTAATATCCAAGA
TGTATAAAGAACTCAACACCGCGGACTCCAAAAAAATCAAATAACCCCAT
TAAAAAATGGGGCTCAGAACTAAACAAAGAATTCTTACCTGAGGAATACC
AAATGGCTGAGAAACATCTGAAAAAAATGTTCAGCATTCTTAATCATCAG
GGAAATGCAAATCATAACAACCCTGAGATTCCATCTCACACCAGTCAGAA
TGGCTAAGATCAAAAACTCAGGTGACAGCAGATGCTGGAGAGGATCTGGA
GAAAGAGGAACACTCCTCCATTGTTGGTGGGATTACAAGCTTGTACAACC
ACCCTGGAAATCAGTCTGGCAGTTCCT
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXATTAGGGGTAGAGATAAAACACTATGATA
ATAAACTCATAGAAATATATGGGATCCAAAATTTTATATATGTATCAGTA
ATTATATGTATTTATATATGTATGCAAAAATATATAACATTTTAAATTTT
GCACATCTATAAGAATTTATGGTTCTATGTTATTTAGAATGATGATGATT
TTATAATTGTATATCATCAAAGTTAAGTGGATTTCTGAACCTAATGACAT
TAAAGAAAAAAGAATCATGCATGTGAGAAGTGTTTTTAACTAATTAAGAA
AGAGACATCTTTCATTTCAAAACTACCATAAGCCTAACATGCTGTTTTTC
AAACTTTTGCATTGGCCACCATCATTTTAAAATATATTTTAGATAGGAAG
TCCAATCAAGGCTATCTGAGAAGTATTTCAAGTACCCAAAATTTCAAATC
TTCTTTTTAGCTTTCAGACCATAACTTCTAGAAAAACAAAAACCAAAACA
AAAACAAAAAACCTTCAACCAGAATTCTACCTTATAGAATTTAGCATATA
ATTTTTAAACACTTGTCTCTGAAATCCCACTTTCTTGCCAGACAAATACG
GCATCTTTCGTACAATTGTGTGTAATCCCAAATGGGGCACAAGCAACAGA
AGTGCATGAAAGACAGTGAAGCAGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_h01.g1 MSMg01no213_h01.g1 CHROMAT_FILE:
MSMg01no213_h01.g1 PHD_FILE: MSMg01no213_h01.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:28 2005
         (300 letters)



>mm_chr12_47227795_47228494
          Length = 700

 Score =  580 bits (300), Expect = e-170
 Identities = 300/300 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   attaggggtagagataaaacactatgataataaactcatagaaatatatgggatccaaaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 attaggggtagagataaaacactatgataataaactcatagaaatatatgggatccaaaa 441

                                                                       
Query: 61  ttttatatatgtatcagtaattatatgtatttatatatgtatgcaaaaatatataacatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ttttatatatgtatcagtaattatatgtatttatatatgtatgcaaaaatatataacatt 381

                                                                       
Query: 121 ttaaattttgcacatctataagaatttatggttctatgttatttagaatgatgatgattt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 ttaaattttgcacatctataagaatttatggttctatgttatttagaatgatgatgattt 321

                                                                       
Query: 181 tataattgtatatcatcaaagttaagtggatttctgaacctaatgacattaaagaaaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 tataattgtatatcatcaaagttaagtggatttctgaacctaatgacattaaagaaaaaa 261

                                                                       
Query: 241 gaatcatgcatgtgagaagtgtttttaactaattaagaaagagacatctttcatttcaaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 260 gaatcatgcatgtgagaagtgtttttaactaattaagaaagagacatctttcatttcaaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 300
Length of database: 700
Length adjustment: 9
Effective length of query: 291
Effective length of database: 691
Effective search space:   201081
Effective search space used:   201081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)