Query= MSMg01no213_j18.b1 MSMg01no213_j18.b1 CHROMAT_FILE:
MSMg01no213_j18.b1 PHD_FILE: MSMg01no213_j18.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:41 2005
(318 letters)
>mm_chr12_96928658_96929375
Length = 718
Score = 576 bits (298), Expect = e-169
Identities = 310/314 (98%)
Strand = Plus / Minus
Query: 5 gaattccgttgtaaatccttctgatttgccaaggtggcagcagagcataggaatagctcc 64
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 518 gaattccgttgtaaatccttctgatttgccaaggtggcagcagagcatagcaatagctcc 459
Query: 65 tttggttcttgaatcagcaaagctcacaatttaggacatatgcatttccaccgtccttta 124
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 458 tttggttcttgaatcagcaaagctcacaatttaggacatatgcatttccaccgttcttta 399
Query: 125 aatatccattcttctgtgcagttatgcatatgtgtccccagaacctattatcctctatat 184
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 398 aatatccattcttctgtgcagttatgcatatgtgtccccagaacctatcatcctctatat 339
Query: 185 ccttcttctgagaagacagtatattaagctcattcttacaaacatatattggttaaccaa 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 ccttcttctgagaagacagtatattaagctcattcttacaaacatatattggttaaccaa 279
Query: 245 caagatgaaaccctaaacaggcttcacattgtgattcatgctactggaaacagaattaat 304
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 278 caagatgaaaccctaaacaggcttgacattgtgattcatgctactggaaacagaattaat 219
Query: 305 ccagaaaaggaaga 318
||||||||||||||
Sbjct: 218 ccagaaaaggaaga 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space: 219081
Effective search space used: 219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no213_j18.g1 MSMg01no213_j18.g1 CHROMAT_FILE:
MSMg01no213_j18.g1 PHD_FILE: MSMg01no213_j18.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:41 2005
(293 letters)
>mm_chr12_96834564_96835256
Length = 693
Score = 470 bits (243), Expect = e-137
Identities = 274/293 (93%), Gaps = 16/293 (5%)
Strand = Plus / Plus
Query: 1 ctgagaactctggcaccaaatttgtactgtagagacaaccagtcttgaaggctgaataac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgagaactctggcaccaaatttgtactgtagagacaaccagtcttgaaggctgaataac 260
Query: 61 tacaactacaactacaagattctcctcaggatacagatattgttgaacttacaagaccac 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacaactacaactacaagattctcctcaggatacagatattgttgaacttacaagaccac 320
Query: 121 accctacaaaccacttgaataaatcaaatctatcttttttctttctttctttctttcttt 180
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 321 accctacaaaccacttgaataaatcaaatctatctt----ctttctttctttctttcttt 376
Query: 181 ctttctttctttctttctttctttctttctttctttctttctttctctctctttcttcct 240
|||||||||||||||||||||||||||||| || ||||||||||||||||
Sbjct: 377 ctttctttctttctttctttctttctttct--ct----------ctctctctttcttcct 424
Query: 241 tacctttttctctcctcactttctctccctgcacatatatatatatatatata 293
||||| ||||||||||||||||||||||||||| ||||||| |||||||||||
Sbjct: 425 tacctctttctctcctcactttctctccctgcatatatataaatatatatata 477
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 67
Number of extensions: 17
Number of successful extensions: 17
Number of sequences better than 10.0: 1
Number of HSP's gapped: 12
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space: 194256
Effective search space used: 194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
