BAC Information

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BAC

Clone NameMSMg01-213K20
Chromosome12 (Build37)
Map Location 95,924,241 - 95,924,610
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603, LOC667688
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213K20.T7 (MSMg01no213_k20.b1)MSMg01-213K20.TJ (MSMg01no213_k20.g1)
ACCAG394592AG394593
length709716
length of high quality
(start - end)
373 (41 - 413)289 (71 - 359)
definitionCHROMAT_FILE: MSMg01no213_k20.b1 PHD_FILE: MSMg01no213_k20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:46 2005CHROMAT_FILE: MSMg01no213_k20.g1 PHD_FILE: MSMg01no213_k20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:39:46 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CTACAGCTTTGGTTCTGCAAGACTGGCCCTTTCATATGCTCCAGCTGTGT
ACAGAGTATATGTTAAAATGGATCAACTCAAAGCCCTGAATCTGGGCTTG
GGTAGTAGCTGAGTTGGTGTGCATAGCAACTCACCCACACCCACGCCACC
AGAGCAAGCTCTTTGTCACCGTCCAGGACAGTGCAAACAGTGTCAGGCTA
ACTCGCCCTGTGCTCATGTCTCTGGGATGGCTCATATTTATCCCCAAATC
CACAGCCAGATGGACTATACTGCCAAGGCAAGCTGTATCATCAGCTGAAG
CTGGAAGGAGGTGGAGCCAACTCTGCACTTGCATAGTCCTTGAACATCAA
ATTGGTCCCAGGATACCCCCACAGGTTTTAGTGGTCTTTAGTGGTAACAT
GAGGTATGGCCATCGACATAAATACCTATGACTGCTTGTCCAGAACCATG
ACACGGACCAGAGTGGTATCACAGAGCTTGGGATTTACCATGGCCTCAGT
TTGCAGGGCAAGCTACTCACAAGAAACTCTTTCTCTCCACCTTCGTGTCT
TCAGTTCCACATCTCTTCATGTTGTTCAAACTGTTCCACTTCTCTTTCTC
TCCCATCTGTCCACCACTTACTCTCACATTGTAGTGGCTCCCACTGTGGG
CAGTCCATG
ACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXCATGAAAATGAAAGCACAACATATCCAAGA
TTATGGAACAAAATTGAAGCAGTATTAAGAGGAAACTTCATAGCAAATTG
CCAGCATAAAGAAATTAGAAAGTTATCACACTAAAACTTTAAAGGTACAT
GTAAAAACTCTAGAAAAGAAGAAGCAAACACACACAAGAATAACAGATGG
CCAGAAATTATCAAACTGGTGGCTGAAAACAATCAGTTGGAAACAAAGAG
AACAAAGCATAGAAACAACAAAATCAAGATCTGGTTCTTTGAGTAAATCA
ACAAGATATTTTTTTCATACCCCCACCCAACTAAAAGGCAGGAAAGTGAG
TACCCAAATTTACAAAACCCCAAATACAAGGAGAGATATAACAGACACTG
ACGAAGTTCAAAGAATTATTAGGTCTTACTTCAAAAGCCTATAATGCACA
AAATTGAAAAATATAAATGAAATGGATAATTTTCTAGACAGATAATGCAT
ACCAAATTTAAATCAATATCAGAGAAACAATCAATGTTGTTCTATAACTC
CTAATTAAATAGAATTCCAAAAATAAAATAAAATAAAATAAAATACTTTA
AATCCAATACAGGACCAGATGCTTTTAGTGCAGTATTCTACTTTCAAACA
AGGGCTAAAACAAATA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_k20.b1 MSMg01no213_k20.b1 CHROMAT_FILE:
MSMg01no213_k20.b1 PHD_FILE: MSMg01no213_k20.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:39:46 2005
         (373 letters)



>mm_chr12_95924038_95924810
          Length = 773

 Score =  669 bits (346), Expect = 0.0
 Identities = 364/370 (98%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcctacagctttggttctgcaagactggccctttcatatgctccagctgtgtaca 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattcctacagctttggttctgcaagactggccctttcatatgctccagctgtgtaca 263

                                                                       
Query: 64  gagtatatgttaaaatggatcaactcaaagccctgaatctgggcttgggtagtagctgag 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 gagtatatgttaaaatggatcaactcaaagccctgaatctgggcttgggtagtagctgag 323

                                                                       
Query: 124 ttggtgtgcatagcaactcacccacacccacgccaccagagcaagctctttgtcaccgtc 183
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 324 ttggtgtgcatagcaactcacccacacccacgccaccagagcaagctctttgtcactgtc 383

                                                                       
Query: 184 caggacagtgcaaacagtgtcaggctaactcgccctgtgctcatgtctctgggatggctc 243
           ||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 caggacagtacaaacagtgtcaggccaactcgccctgtgctcatgtctctgggatggctc 443

                                                                       
Query: 244 atatttatccccaaatccacagccagatggactatactgccaaggcaagctgtatcatca 303
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 444 atatttatccccaaatccacagccagatggactatactgccaaggcaagctgtatcatta 503

                                                                       
Query: 304 gctgaagctggaaggaggtggagccaactctgcacttgcatagtccttgaacatcaaatt 363
           ||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 504 gctgaagctagaaggaggtggagccaactctgcacttgcattgtccttgaacatcaaatt 563

                     
Query: 364 ggtcccagga 373
           ||||||||||
Sbjct: 564 ggtcccagga 573


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 373
Length of database: 773
Length adjustment: 9
Effective length of query: 364
Effective length of database: 764
Effective search space:   278096
Effective search space used:   278096
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)