BAC Information

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BAC

Clone NameMSMg01-213P02
Chromosome12 (Build37)
Map Location 77,485,196 - 77,662,045
singlet/doubletdoublet
Overlap geneZbtb1, Hspa2, Gm70, LOC100041694, Plekhg3
Upstream geneRhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2, Esr2, LOC665957, Tex21, Mthfd1, Akap5, Zbtb25
Downstream geneSpnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-213P02.T7 (MSMg01no213_p02.b1)MSMg01-213P02.TJ (MSMg01no213_p02.g1)
ACCAG394766AG394767
length739763
length of high quality
(start - end)
213 (41 - 253)245 (72 - 316)
definitionCHROMAT_FILE: MSMg01no213_p02.b1 PHD_FILE: MSMg01no213_p02.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:07 2005CHROMAT_FILE: MSMg01no213_p02.g1 PHD_FILE: MSMg01no213_p02.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:07 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,661,837 - 77,662,045)(77,485,196 - 77,485,440)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATTTGTGGTGCTTTAAGTCAACAGGTTTTGTGCATAGCCCTAATAGACTC
ACACACCTGCCTCCTCACCAGGCACATGTCACCTTTCCCCCGAATGCCCT
ACCCCATGAAACATTTTTCTTCTTCTATGCCTAATCTTTTTCAGGCAAAG
AGCCCGAGGCTCCAGACATTGAGCCCATGCTCGAGGTTCCACAGCCATGA
AATAGCGGAGTGGTGAACCTGGATGAACCTACCCAGGTTTAATCCCTACA
GAGCTCTTAGGTGTCTTCCTTGCCAGGCTAAAGCCCCTCCCTGCGCTATC
ACATTGCCTACNCTCCCCGNACCTCCCCCAAATTCTACAACCCTACTAAC
GTGGCTTGGTCCCCCCACCCAAAAAAAAAAAGTTTAGAGTCCCCACTAGG
CAGGTCCACAAAGCTTCCTCATGGTTTTATGACACCCAAATCTAGAGAAA
CAGGCTGAACTATAGAGCTGGTTCACCGTAGTCCCAGCATCCTATGGCCC
CTTTATTTAGCCAGCCCCCTCCCAGACTCAGTATCCAATTCCATAACGCC
TCCGTACGTCCCGCACATACATGTGCTCTGCTTTCACCCATTTCTCCTCC
CCCTCTCGGTCCATTACACCCTGACCTCTGTGTAAACTTCACTTACTTGT
TTCCTTGCACACCTCCTCTGCATTGTCCGCATATAGTTT
GXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXCATTGCCCTCTCTGGCTGGAGCACATGCA
TATACACATGAAAGAATTGCTAAAAACCCAAAGTGAATTTGAAAAGGGAA
GACTTTTAGCACAGTAAGAAAAAAAAGGCCCATATTACACTTTGAAAACA
AGCATCAGTTCCTTACTGTCAAATCATTCAGAAGGCTTTCTTTGATTCAC
TTTTGCCGTTTGTATCTTTTGAATTAATATCTGGTCTCTTTCAGATTTAT
TATGTGTCTTCCCTCTAGGATAAAAACAGCTATTTTGTGTGTGTGTGTGT
TCATTTTTGTTTTTTGCCCCCCCCCCCCGACCGGGTTGGTTGTGTGGTGT
GTGTCTGCACTGTCACCCCCTATAACAAACATGCTTTTTGTTTTGCGTGT
GTCGCCGTTTACCTTTCCCCCTTATCCCTTCCCTCTACCTCTACCTCTTC
CTCTTTCTTCCCGCCCCCTTTACTTCTCTTTTTTTTCCCCCTCTCCCCTT
TCCTTTCCTTTCCCCGTCCCTCCCTTCCCTTTTCCTTTTCTCCTTTTTCT
CTCCCTTTCCCGTTCTTTTTATTTCTCTTCCTCCTTCTTTCCGCCACTTC
ATCTCCTTGTCTTATTTCCTTTTTCTTCCGTTCACCTCCCTCCCCTTTTT
TTATCATACTCTTCCAGGCCTGTACCCCACTCACCCTTCCCATATCCCTT
TATTTACCTTCTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no213_p02.b1 MSMg01no213_p02.b1 CHROMAT_FILE:
MSMg01no213_p02.b1 PHD_FILE: MSMg01no213_p02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:07 2005
         (213 letters)



>mm_chr12_77661633_77662245
          Length = 613

 Score =  350 bits (181), Expect = e-101
 Identities = 202/209 (96%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatttgtggtgctttaagtcaacaggttttgtgcatagccctaatagactcacac 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 413 gaattcatttgtggtgctttaagtcaacaggttttgtgcatagccctaatagactcacac 354

                                                                       
Query: 65  acctgcctcctcaccaggcacatgtcacctttcccccgaatgccctaccccatgaaacat 124
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 353 acctgcctcctcaccaggcacatgtcacctttcccccgaatgccctaccgcatgaaacat 294

                                                                       
Query: 125 ttttcttcttctatgcctaatctttttcaggcaaagagcccgaggctccagacattgagc 184
           | |||| || | ||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 293 tcttctactgccatgcctaatctttttcaggcaaagagcccgaggctccagacattgtgc 234

                                        
Query: 185 ccatgctcgaggttccacagccatgaaat 213
           |||||||| ||||||||||||||||||||
Sbjct: 233 ccatgctcaaggttccacagccatgaaat 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 213
Length of database: 613
Length adjustment: 9
Effective length of query: 204
Effective length of database: 604
Effective search space:   123216
Effective search space used:   123216
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no213_p02.g1 MSMg01no213_p02.g1 CHROMAT_FILE:
MSMg01no213_p02.g1 PHD_FILE: MSMg01no213_p02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:07 2005
         (245 letters)



>mm_chr12_77484996_77485640
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   cattgccctctctggctggagcacatgcatatacacatgaaagaattgctaaaaacccaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 201 cattgccctctctggctggagcacatgcatatacacatgaaagaattgttaaaaacccaa 260

                                                                       
Query: 61  agtgaatttgaaaagggaagacttttagcacagtaagaaaaaaaaggcccatattacact 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agtgaatttgaaaagggaagacttttagcacagtaagaaaaaaaaggcccatattacact 320

                                                                       
Query: 121 ttgaaaacaagcatcagttccttactgtcaaatcattcagaaggctttctttgattcact 180
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 321 ttgaaaacaagcatcagttccttactgtcaaatcattcagaaggctttctttgatttact 380

                                                                       
Query: 181 tttgccgtttgtatcttttgaattaatatctggtctctttcagatttattatgtgtcttc 240
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgtcgtttgtatcttttgaattaatatctggtctctttcagatttattatgtgtcttc 440

                
Query: 241 cctct 245
           |||||
Sbjct: 441 cctct 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)