BAC Information

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BAC

Clone NameMSMg01-214C22
Chromosome12 (Build37)
Map Location 96,108,385 - 96,108,674
singlet/doubletsinglet
Overlap genenone
Upstream gene2610022K04Rik-ps, EG633639
Downstream geneLOC217786, LOC100039603, LOC667688, Flrt2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214C22.T7 (MSMg01no214_c22.b1)MSMg01-214C22.TJ (MSMg01no214_c22.g1)
ACCAG394919AG394920
length714721
length of high quality
(start - end)
276 (439 - 714)292 (77 - 368)
definitionCHROMAT_FILE: MSMg01no214_c22.b1 PHD_FILE: MSMg01no214_c22.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:25 2005CHROMAT_FILE: MSMg01no214_c22.g1 PHD_FILE: MSMg01no214_c22.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCTGATGTTTTCCCGGTGTTTTATTTTGTCAAAGCCTTTTTCAGCAT
CTAATGCAATGATTTTGTATTTTTCCTATTTGAGGTTTTTTTTTTTATAT
AGTGGATTACATTGATGAATTTTCATATATTGAACCATGTCTGCATCTCT
GGAATGAAGCCTACTTATCATAGTGAATGACGGTTTTGATATGTTCTCAG
ATTTGGTTTGCAAGAATTTTATTGAATATTTTTGCATTGATATTTATAAG
TGAAATTGGCCTGATGTTCTCCTTTGTTGGGTCTCTGTGTGGCTTAGGTA
TCAGAGTGTATGTGTCTTCTTACCCCCCCCCACCCAGTGTTCCTTTTCTT
TTTATTTTGTTGAATAGTTTACAGAATAAAAAAATTAAGTCTTCAAAATG
TCTAGTAGAATTCTGCACTAAAATCATCTTGTTCTGTGCATTTGTTGTTG
TTTGTTTGTTTGTTTCTGTATTGTTTTGGTTGGGAGGTTTTAAATGACTG
CCTCTATTTTCTTAGGGATTATGAGACTATTTAGATAGCTTCCCTGCTCT
TGATTTAACGTTGGTATTTGGTAGGTATCTCTCTAGAAAATCATCCATTT
CTTCTAGCTTTCCCAGGTTTTTGAGTATAGGCTTTTGTAGTAAGATCTGA
CAATTTTTTGCATT
CCATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTTAGGGCATTTTCCACCAAATA
AATTTCTTAAGGGCTTTGTGTTTTGAACACAGATGATCAGATGTTTTATT
CAGCAAATGCATGTGTAGCAGTCTTTTAAGCTTGAAGTGCCTGATAATGA
CAGGAGGGTACAAAGGAATGCAAGTTCCCCACTTTTCAGAAAACTGAAAA
GTATGTGAGTAATTTTATGATCCGCCCAAGTCTGTCACTGGTGGATGCTT
ACAGCATGACCAACATTATCTGCCTAAAACATGCTTATCTACTTTATTTT
GTATTTAAAAAACAGGTTTATACTTACCCGCACCACCGCGCACTGTATTT
GAACTTAAACGCGATAGGACATTGCAAGAAAGAAAAAGACTTCTTTAAAA
TGGGAATGAGTAAAACCTTGAGAGGAAGTGTTGAGAATAATTATGTCAGA
TTCCATTTTTGGCATGGTTCATTTGTCACACACAAGAGCATATAGCCCAC
ATGTAGACATATACACATACATTTCATATATATATATACATATATATGTG
TGTGCATATATATAAATTAATGAATATATACTATATTAAATTTACACATA
TGTACAGTTGCTCAAGACAAGTTCTAGAACATTGTTAAAGTATGAATTAA
GGCAACATTCCATATATTCTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_c22.g1 MSMg01no214_c22.g1 CHROMAT_FILE:
MSMg01no214_c22.g1 PHD_FILE: MSMg01no214_c22.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:25 2005
         (292 letters)



>mm_chr12_96108185_96108876
          Length = 692

 Score =  530 bits (274), Expect = e-155
 Identities = 286/290 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   atttagggcattttccaccaaataaatttcttaagggctttgtgttttgaacacagatga 60
           ||||||||||||||||||||||||||||||||||||||||||||| | ||| ||||||||
Sbjct: 201 atttagggcattttccaccaaataaatttcttaagggctttgtgtatagaagacagatga 260

                                                                       
Query: 61  tcagatgttttattcagcaaatgcatgtgtagcagtcttttaagcttgaagtgcctgata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tcagatgttttattcagcaaatgcatgtgtagcagtcttttaagcttgaagtgcctgata 320

                                                                       
Query: 121 atgacaggagggtacaaaggaatgcaagttccccacttttcagaaaactgaaaagtatgt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atgacaggagggtacaaaggaatgcaagttccccacttttcagaaaactgaaaagtatgt 380

                                                                       
Query: 181 gagtaattttatgatccgcccaagtctgtcactggtggatgcttacagcatgaccaacat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gagtaattttatgatccgcccaagtctgtcactggtggatgcttacagcatgaccaacat 440

                                                             
Query: 241 tatctgcctaaaacatgcttatctactttattttgtatttaaaaaacagg 290
           |||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 441 tatctgcctaaaacatgcttatctactttattttttatttaaaaaacagg 490


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 292
Length of database: 692
Length adjustment: 9
Effective length of query: 283
Effective length of database: 683
Effective search space:   193289
Effective search space used:   193289
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)