BAC Information

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BAC

Clone NameMSMg01-214H05
Chromosome12 (Build37)
Map Location 97,770,692 - 97,770,977
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC667688, Flrt2, 1700019M22Rik, LOC100039664
Downstream geneEG628277
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214H05.T7 (MSMg01no214_h05.b1)MSMg01-214H05.TJ (MSMg01no214_h05.g1)
ACCAG395096AG395097
length740734
length of high quality
(start - end)
317 (46 - 362)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no214_h05.b1 PHD_FILE: MSMg01no214_h05.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:46 2005CHROMAT_FILE: MSMg01no214_h05.g1 PHD_FILE: MSMg01no214_h05.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:40:46 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGGATTAATATATTTGAGGTGAGTGTGTGGCCCCATCCCTCAACT
GGGGACGGTGCCTATCTATTGCCGAAGTCTCTTCAGGTTCTATCTCGCCT
TTGTTGGGTACTTTGACTAATGTCCTCCCTGTTCAAACTTAGAAAACCCA
TTATTTTCTTTCTTAATTTCTGTATTGACCAGGAGTTTTCAGTAAGTAAT
GAGCTGTTCAGTTTCCATGAGTTTGTAAGCTTTCTGTGGTTTCTGTTGGC
ACTGATAGCCAGATTTCACTAATGGTTCTCAGATAAAGTGCAGATGTGGT
ATTTAAACATTCTTGTATCCACCCGCCACTTGCTTTGTGACTGAGTATAT
TGTCAGTTTTGGAGAACCCCCCATGAAGAGCTTAGAAGAAAGTGACTGGA
TGAACCATTTTTTTGTCTCTGAATTTTAGGATTGGTTCAGCCAGTTGTTC
TTAATTTCTCTTCTGTAAATCTTTCTCTTGGTCTCTCTCTCTCTCTCTCT
CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTTCTTCTCTCACACTCTTGTT
CTTTGTTTCTTTTTCATGTCCGTGTGTTTTTGTGAGTGAGTTTTGTGTGT
ATGTGCGCACTTTTGTTTTCTATTTTATTATTCTTCTCATTATACTCTCT
CTCTCGATATCATCTCTTTCTCCTCTCATATTTCTCAATT
CGAATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXAGAAGAAAATTTATAGGAGTTCAT
TCTTTGAATCATGTAGGTTGCAGCCCTAGAACTCTGGAATTTAGGCATGG
AAGAAAATATCTTTACTCCATGAGCCATCTTCCCGAAGGCTAAAAGTTTT
TTTTTTTTTTTTTATCAATATGTCCATTTCCTGCATCTCTTAAACAAATT
AAGAAGCTCCTTCAATATTTTTCCATTGTTTTCTTTCCTTAACTGAGAAA
AAAAAAAAAAACAATGGGTGTGTTGTATAATACCAGGAAATTCACAGAAC
TGAAGGATAATCTAGTTAGTTGTACCCCGCGGCTATGATAAAAATAACAC
ATGGTAAATTGCAAACCATGCCCATTGGTGACCCTCCACCATCTAACTGA
GAAAGATACCCCAAAGCCTTTACTGTGACTTATAATTATGATGAGATACA
AAGTAAATAAATAAAAAGGAAGATCTGTAATATTTGAGTAGAAAAATCAA
CAATTTTAAAACTTGAGATTGGGCTGGAGAGGTGGTTCAGTGGTTAAGAG
CACTGGCTGCTCTTCCAGAAGGTCCTGAGTTCAAGTCCCAGCAACCACGT
GGCGGCTCACAACCATCTGTAATGGGGTCCAATGCCCTCTTCTGGCGTGT
CTAAAGATAGCTACAGTGTATTCATTATACCTAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_h05.g1 MSMg01no214_h05.g1 CHROMAT_FILE:
MSMg01no214_h05.g1 PHD_FILE: MSMg01no214_h05.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:40:46 2005
         (291 letters)



>mm_chr12_97770492_97771177
          Length = 686

 Score =  513 bits (265), Expect = e-150
 Identities = 283/291 (97%), Gaps = 5/291 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   agaagaaaatttataggagttcattctttgaatcatgtaggttgcagccctagaactctg 60
           |||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||
Sbjct: 201 agaagaaaatttataggagttcattctttgaatcatgtaggttgcaggactagaactctg 260

                                                                       
Query: 61  gaatttaggcatggaagaaaatatctttactccatgagccatcttcccgaaggctaaaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gaatttaggcatggaagaaaatatctttactccatgagccatcttcccgaaggctaaaag 320

                                                                       
Query: 121 tttttttttttttttttatcaatatgtccatttcctgcatctcttaaacaaattaagaag 180
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttttttttttttttt--atcaatatgtccatttcctgcatctcttaaacaaattaagaag 378

                                                                       
Query: 181 ctccttcaatatttttccattgttttctttccttaactgagaaaaaaaaaaaaaacaatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||
Sbjct: 379 ctccttcaatatttttccattgttttctttccttaactgagaaaaaaaaaaa---caatg 435

                                                              
Query: 241 ggtgtgttgtataataccaggaaattcacagaactgaaggataatctagtt 291
           ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 436 ggtgtgttgtagaataccaggaaattcacagaactgaaggataatctagtt 486


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 686
Length adjustment: 9
Effective length of query: 282
Effective length of database: 677
Effective search space:   190914
Effective search space used:   190914
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)