BAC Information

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BAC

Clone NameMSMg01-214M20
Chromosome12 (Build37)
Map Location 99,618,233 - 99,618,519
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214M20.T7 (MSMg01no214_m20.b1)MSMg01-214M20.TJ (MSMg01no214_m20.g1)
ACCAG395294
length725803
length of high quality
(start - end)
---287 (131 - 417)
definitionCHROMAT_FILE: MSMg01no214_m20.b1 PHD_FILE: MSMg01no214_m20.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:14 2005CHROMAT_FILE: MSMg01no214_m20.g1 PHD_FILE: MSMg01no214_m20.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXX
AGACTTGTTGTTTTTTTGTNNNCAACAATCATTCTTTATATTTTNNNNNN
NNNCAACGATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAATAGTGAAAGACAGA
TAATATAGCCTGTAAGACGTGCTGATTACCCCAGATAGGAGAAGTGGAGC
ACTGGATGGAGAGCGTGTTGGCTGCTAGTGTAAAGCATGCAAAGAGCAAG
TCATAAAGCATGCTGCTACTGCTCTTCTGAGCTGACAACTGTCACCCGTA
AACTGGTCATCCATTGGTGACGATGCCCAGTGCTGCCTTGTCATGTGCCA
CATGTCCTCTGACTGAGAAATTCAGTCAATCTCTGTTGCTGTTGAATAGA
CTGATTCCCAAGTGATGTTTGNGTCCCTCTCTAAACATGACCCAGTATCC
TAGAGGGAGTTGGTGCCTGATCTGCCCCCCCACACATTAAGAAAATCTCG
CTCGTGGGGTTGCTTCATCTCTGGACTTGATGATCCCTCTGCATTCTTTA
TAGGAACAGGACCGATGGAAGAGATGTATACCATAAAAGGGAGTTTCTTA
GATTTGTCTAATGAAGCATCTAATGTTGGTTAAACCGAGCATTGAAGAGA
GTTAATGAAAATCTAATAAACGGCTCTAACCCTCTTCTTCCTAAACTGTC
CATTTTAGCCAAGCCCCTATTGGCTATTTTTCTGGGACTTGATTCTTTGA
GGCGATCGCCCACCTATGTATAATTTTAAATAATTCTGGGTCAGCCTCTT
TTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_m20.g1 MSMg01no214_m20.g1 CHROMAT_FILE:
MSMg01no214_m20.g1 PHD_FILE: MSMg01no214_m20.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:14 2005
         (287 letters)



>mm_chr12_99618033_99618719
          Length = 687

 Score =  470 bits (243), Expect = e-137
 Identities = 276/287 (96%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctaaaatagtgaaagacagataatatagcctgtaagacgtgctgattaccccagatagga 60
           |||||||||||||||||||||||||||||||||||||||||||||  ||   ||||||||
Sbjct: 487 ctaaaatagtgaaagacagataatatagcctgtaagacgtgctgaagacaggagatagga 428

                                                                       
Query: 61  gaagtggagcactggatggagagcgtgttggctgctagtgtaaagcatgcaaagagcaag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 427 gaagtggagcactggatggagagcgtgttggctgctagtgtaaagcatgcaaagagcaag 368

                                                                       
Query: 121 tcataaagcatgctgctactgctcttctgagctgacaactgtcacccgtaaactggtcat 180
           ||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 367 tcataaaacatgctgctacagctcttctgagctgacaactgtcacccgtaaactggtcat 308

                                                                       
Query: 181 ccattggtgacgatgcccagtgctgccttgtcatgtgccacatgtcctctgactgagaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 307 ccattggtgacgatgcccagtgctgccttgtcatgtgccacatgtcctctgactgagaaa 248

                                                          
Query: 241 ttcagtcaatctctgttgctgttgaatagactgattcccaagtgatg 287
           ||||||||||| |||  ||||||||| ||||||||||||||||||||
Sbjct: 247 ttcagtcaatccctgcagctgttgaacagactgattcccaagtgatg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)