BAC Information

Click to search

BAC

Clone NameMSMg01-214M21
Chromosome12 (Build37)
Map Location 99,618,227 - 99,618,465
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC382626, LOC100039743, LOC667732, LOC628351, LOC100039770, LOC667746, Galc, Gpr65
Downstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-214M21.T7 (MSMg01no214_m21.b1)MSMg01-214M21.TJ (MSMg01no214_m21.g1)
ACCAG395295AG395296
length720726
length of high quality
(start - end)
---239 (131 - 369)
definitionCHROMAT_FILE: MSMg01no214_m21.b1 PHD_FILE: MSMg01no214_m21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:14 2005CHROMAT_FILE: MSMg01no214_m21.g1 PHD_FILE: MSMg01no214_m21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:14 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTATTCTTTATTCCAAGCATGCTGGCCCTGTACCAGATACCATGCA
GTTTTTATCATCATTGAGTCTGTTTGACCGCTTGAGGGCTGGGATGATGA
TTCCACCAAAGAGTCTTTTATTGTTGAGAATAATTTTTGCTATCCTACGC
TTTTTGTTATTCCCGAAGAATTTGCGAGTTTCCCTTGCTAAGTCTATGAA
GAAGTGGTATGCAATTTTGATAGGAATTACTCTGAGTCTGTATATTGCTT
CTGGCAACAGAGCCAGTTTTACGTATTATTAGTCCTGCCAATCCATGAGC
ATGAGAGATCTTTCCATCTTCTGAGATCTTCGATTTCTTCTTCAGAGACT
TGATGTTCCTATCATACCGATCTTTCACTTGGCTATCTAGAGTCTTGCCG
AGGTATTTTATATTATTTCTGACTATTGTGAATGGTGAAAGAAATTCCCT
AATTTCTTTCTCAGCCTGATTATCCTCTGTGGACAGAAAGGCCACTGATT
TGAGTTAATTTTTTATACTCCTATTTCATGTGAAGTTGTTTATCAGACTT
AGGACTTCTCTGAGGGAATTTTTGGCGACACTTATGTATACTATCATATC
ATGTGCCACTGGAGATATCTTGTGTGCTTCCTTTGCAATCAGCATGCTGT
TGATCTCATTCTGTTGGCTA
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCTAAAATAGTGAAAGACAGATAAT
ATAGCCTGTAAGACGTGCTGATTACACCCGATAGGAGAAGTGGAGCACTG
GATGGAGAGCGTGTTGGCTGCTAGTGTAAAGCATGCAAAGAGCAAGTCAT
AAAGCATGCTGCTACTGCTCTTCTGAGCTGACAACTGTCACCCGTAAACT
GGTCATCCATTGGTGACGATGCCCAGTGCTGCCTTGTCATGTGCCACATG
TCCTCTGACTGAGAAATTCAGTCAATCCCTGTAGCTGTTGAATAGACTGA
TTCCCAAGTGATGGCCGTGTTCAGGCATCCTCCGCTTCAGTCTCCTAGAG
GGAGCTGGTGCCTGCTCTGGTCCCACACACTTTGTGTTTTCTCACTCATG
TCCTTGCTTCATCTCTGGACTTGATGATCCCTCTGCATTCTTTAAAGGAA
CAGGACCGATGGAAGAGATGTATACAATAAAAGGGAGTTTCTTAGATTTG
TCTAATGAAGCATCTAATGAAGGTAAAACAGAGCATTGATGAGAGTTAAT
GAAATCTAATAAACGGCCTAACCCTCTTCTCCAACACTGTCCATATTAGT
AAGTCCTATTGTTATTTTCTGGACTTGTTCTGTGTGGCTCGTCACTAGGA
GAGGCTAAGAATCTGGCAGCTATTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no214_m21.g1 MSMg01no214_m21.g1 CHROMAT_FILE:
MSMg01no214_m21.g1 PHD_FILE: MSMg01no214_m21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:14 2005
         (239 letters)



>mm_chr12_99618027_99618665
          Length = 639

 Score =  431 bits (223), Expect = e-125
 Identities = 235/239 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   ataggagaagtggagcactggatggagagcgtgttggctgctagtgtaaagcatgcaaag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 ataggagaagtggagcactggatggagagcgtgttggctgctagtgtaaagcatgcaaag 380

                                                                       
Query: 61  agcaagtcataaagcatgctgctactgctcttctgagctgacaactgtcacccgtaaact 120
           ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 379 agcaagtcataaaacatgctgctacagctcttctgagctgacaactgtcacccgtaaact 320

                                                                       
Query: 121 ggtcatccattggtgacgatgcccagtgctgccttgtcatgtgccacatgtcctctgact 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 319 ggtcatccattggtgacgatgcccagtgctgccttgtcatgtgccacatgtcctctgact 260

                                                                      
Query: 181 gagaaattcagtcaatccctgtagctgttgaatagactgattcccaagtgatggccgtg 239
           ||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||
Sbjct: 259 gagaaattcagtcaatccctgcagctgttgaacagactgattcccaagtgatggccgtg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 239
Length of database: 639
Length adjustment: 9
Effective length of query: 230
Effective length of database: 630
Effective search space:   144900
Effective search space used:   144900
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)