BAC Information

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BAC

Clone NameMSMg01-215A07
Chromosome12 (Build37)
Map Location 15,513,667 - 15,513,890
singlet/doubletsinglet
Overlap genenone
Upstream geneMap1lc3-ps7, LOC668492, LOC100042426
Downstream geneLOC217409, Trib2, LOC100043268, EG432636, LOC100043273
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215A07.T7 (MSMg01no215_a07.b1)MSMg01-215A07.TJ (MSMg01no215_a07.g1)
ACCAG395427AG395428
length707774
length of high quality
(start - end)
226 (122 - 347)228 (181 - 408)
definitionCHROMAT_FILE: MSMg01no215_a07.b1 PHD_FILE: MSMg01no215_a07.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:32 2005CHROMAT_FILE: MSMg01no215_a07.g1 PHD_FILE: MSMg01no215_a07.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:41:32 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
ATATTTTACTCTATGTATGTAGGTCCTCTTGGGATTTTTTGTTTTGTTCG
GATTGGTTTGTTTTGCCTGTTTTCCATTTTTTATTAGGTATTTTCTTCAA
TTACATTTCAAATGTTATCCCGAAAGTCACCAACAACTTCTGCATCCCCC
ACTCCCCTACACACCCACTCCCATTTCTTGGCCTTAGTGTTCCCCTGTAC
TGGGGAATATAAAGTTTATAAGACCAAGGGGCCTCTCTTCCCAATGATGG
CCAACTAGGCCATATTCTGCTACATACACAGCTAGAGACAGGAGCTCTGA
TTGNATGNTTTACCAATACCTGACCCCCCATATATGGGGTTGGAGACCCT
GTCAGCTCCTTGCAAACAAAAAAAAAAAACTCCGTTGGGGGCCTGAGTTC
CATCCAATAACTGACTATGAACATCCACTTCTGTGTTTGCCAGGCACTGG
CATAGACTCACAAGAGACAGTTATATCAGGGTCCTTTCAACAAAATCTTG
GAGGCATATGCTATAGTGTCAGCGCTTGCCGGATGATTATGGAATGGATC
CTTGGATGGTGGAGTCTCTAAAAGGTCCACCATTCCATCTCAGCTCCCAA
CTTTGTTTCTATAACTCCCTCCAGGGAAGTTTTTGATGCCGATTCTAACT
AAGTAGN
TACCCCCAGCCCCCCCCCNNTTCTTTTCTCCCCTTTTTTTTNNNAAGGGG
TTTCAATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCAGAGGAAGGGGTCTATGCTGC
AGTCTGAAAGAACTGTGTGTTTAGACCGGCTGAAGACCAAGAAAATATTT
TCTGATCACCCTAAATGTTGGGTAGAATAAATTGTTCTACATTTCACAAA
ACACTAATTATTATTCCATGTGAGATCAGCAATATCATGAAGAACACAGG
CATATTGGGTATCACTAATTAGATACAATGGAATACACTTTAAGCATAAA
GAGAACAGAAAGGACTCCAGAGATAATGTCTCAGTGGTTAAGAGCATTGA
CTGACCTTCTATANGATCNGATTTCATTCCAAGNCCCCANNTGATGGCTC
ACAATAGTCTGTAACTCCCGCCTTCAAACCTCAGCAAATTTCTGACCTCC
GGGAGCATTGAATGTACATGGCACACATACATAGATGTAGGCAAAACACC
CATATATACACAAAAGAAAATGAAAAACAAAAAGACATAGAATGTGTTGT
GAGGTACCTTGGACAGTTGGAAGGAAGATTGAAGGGGCAAGTATAATCAT
AATACATTGTATGCATGTACAACATTCTCAAAGAAAAAATAAAATACTTT
TAAATAATGAGACTAGGATCCATTCGAGATAACTTGGGGAAACCAGATGT
TAATCCCGCTTTATCATTTTATAA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_a07.g1 MSMg01no215_a07.g1 CHROMAT_FILE:
MSMg01no215_a07.g1 PHD_FILE: MSMg01no215_a07.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:41:32 2005
         (228 letters)



>mm_chr12_15513467_15514094
          Length = 628

 Score =  410 bits (212), Expect = e-119
 Identities = 221/224 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgaagaccaagaaaatattttctgatcaccctaaatgttgggtagaataaattgttctac 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 424 tgaagaccaagaaaatattttctgatcaccccaaatgttgggtagaataaattgttctac 365

                                                                       
Query: 61  atttcacaaaacactaattattattccatgtgagatcagcaatatcatgaagaacacagg 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 atttcacaaaacactaatcattattccatgtgagatcagcaatatcatgaagaacacagg 305

                                                                       
Query: 121 catattgggtatcactaattagatacaatggaatacactttaagcataaagagaacagaa 180
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 cagattgggtatcactaattagatacaatggaatacactttaagcataaagagaacagaa 245

                                                       
Query: 181 aggactccagagataatgtctcagtggttaagagcattgactga 224
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 aggactccagagataatgtctcagtggttaagagcattgactga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 228
Length of database: 628
Length adjustment: 9
Effective length of query: 219
Effective length of database: 619
Effective search space:   135561
Effective search space used:   135561
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)