BAC Information

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BAC

Clone NameMSMg01-215G11
Chromosome12 (Build37)
Map Location 46,638,401 - 46,685,333
singlet/doubletdoublet
Overlap genenone
Upstream geneNrcam, EG620025, Stxbp6
Downstream geneLOC664952
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-215G11.T7 (MSMg01no215_g11.b1)MSMg01-215G11.TJ (MSMg01no215_g11.g1)
ACCAG395665AG395666
length713721
length of high quality
(start - end)		611 (40 - 650)645 (77 - 721)
definitionCHROMAT_FILE: MSMg01no215_g11.b1 PHD_FILE: MSMg01no215_g11.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:04 2005CHROMAT_FILE: MSMg01no215_g11.g1 PHD_FILE: MSMg01no215_g11.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:42:04 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(46,684,727 - 46,685,333)(46,638,401 - 46,639,045)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCT
AAAATACCAAGTGTTCAAGCATCTGTATGAATTAGGAAAGGCAACCATAT
GAATTTGGTCTTGCCCTGAACACATGGAAATGTAAACTGAGTCATTGACA
ACATGAAATTCTTATCATACTTTAGTATTTTAGTGTTTATTACCTATATA
CATAAAACAATCCAGAATAAAGGTTTTCCCTGACAGGTTTTAGTTGGCCA
TGTCTGGGACTAGAGTTAGGCTTGGGGTAGAATCAACAGATTGGAAACAG
AGAACAAAACCAAAGATTCTCTTCACCCACCCATTTCTTTGGTACATGGG
ATGTTCCTATGCTCACCCCCAATTGTCTTCTCTCAGAGTCTACAACCTGC
ATCTACTGCACCGCTCTGATTTGATCTTCACGTGGGTTAAAGCTTGGAGA
TAAAGGAGCTGAGGGGGGAGAGGTTTGCAAGGTGACATGGTCTCAGAGCC
ACCTGCCTACACTTTCAGATTTTGATTTTCTCTTTCAGTAGATTTGCAGT
TCTTGTCATTTCTGATCTGAGATCTCAATGGTCTTTTGAATTTTAACCAA
CATTTCGTTCTTATCCCTGGGACACACTTAAGAACAGTGTACTGACTCCT
AACTCTCTTAATTACCTTTCAAGTGCTGTGGCAAAACACTAAGGCCAAAA
TAACTTATTATAG

CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXATTCATTTTAAATGAATAAATGAA
ATGAAGCAGTCATAAATATTTCACACAATTATCGGGAAAATATTTTAATG
TGTTATATAATGACTATAAGTCATAAAAGATTATGGTAAATGCAATATAT
TCATATGTATTTGTGTACGTGTACACAGAGGAAGTATGGAAAGATACATT
AACATGTCATAGTGTGTTTTACTTGGTCCTCGTACTATAAATTATTTTAT
TTTAAATTGTTCTCTTACACTGTTAAAAGTGGTCATTTCAGTGCTTTCCT
GGTTCTTGAGAAGAGTGATTTCAGAAGTCTTATTCAGTGATCATATTGTA
TTTCAGTATCAGCACTGACGCTGATATATTTAGGACTGACATTGTCACTA
AGACCCTGAAGCCATTTGTATAAATGAACATTGCTTTCTATTCTGTTTAA
CAAATGATTTTGAAGAGAAGCCCAAATTCTAAGAAACCCTAAAGATATCT
ACTTAAGAGCATAGTCTTATCTGTAGATAAAATACAAGAGGACCAGATTG
AGAAGGAGGTGGGAAGTGCCATGCCATCACGCAGATGTTTAATGTTCTTT
TGATAGTTTAAGTTTCACATGTCTCTAATAAAAGATGCCACTGTACGTAT
TAGTAGCCTCTATCCTTTTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no215_g11.b1 MSMg01no215_g11.b1 CHROMAT_FILE:
MSMg01no215_g11.b1 PHD_FILE: MSMg01no215_g11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:04 2005
         (611 letters)



>mm_chr12_46684523_46685533
          Length = 1011

 Score = 1096 bits (567), Expect = 0.0
 Identities = 597/607 (98%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattctaaaataccaagtgttcaagcatctgtatgaattaggaaaggcaaccatatgaa 64
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 811 gaattctaaaataccaagtgttcaagcatccgtatgaattaggaaaggcaaccatatgaa 752

                                                                       
Query: 65  tttggtcttgccctgaacacatggaaatgtaaactgagtcattgacaacatgaaattctt 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 751 tttggtcttgccctgaacacatggaaatgtaaactgagtcattgacaacatgaaattctt 692

                                                                       
Query: 125 atcatactttagtattttagtgtttattacctatatacataaaacaatccagaataaagg 184
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 691 atcatactttagtattttagtgtttattacctatacacataaaacaatccagaataaagg 632

                                                                       
Query: 185 ttttccctgacaggttttagttggccatgtctgggactagagttaggcttggggtagaat 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 631 ttttccctgacaggttttagttggccatgtctgggactagagttaggcttggggtagaat 572

                                                                       
Query: 245 caacagattggaaacagagaacaaaaccaaagattctcttcacccacccatttctttggt 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 571 caacagattggaaacagagaacaaaaccaaagattctcttcacccacccatttctttggt 512

                                                                       
Query: 305 acatgggatgttcctatgctcacccccaattgtcttctctcagagtctacaacctgcatc 364
           |||||||| |  |||||||| |  || |||||||||||||||||||||||||||||||||
Sbjct: 511 acatgggagggccctatgctaaggcctaattgtcttctctcagagtctacaacctgcatc 452

                                                                       
Query: 365 tactgcaccgctctgatttgatcttcacgtgggttaaagcttggagataaaggagctgag 424
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 451 tactgcaccgttctgatttgatcttcacgtgggttaaagcttggagataaaggagctgag 392

                                                                       
Query: 425 gggggagaggtttgcaaggtgacatggtctcagagccacctgcctacactttcagatttt 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 391 gggggagaggtttgcaaggtgacatggtctcagagccacctgcctacactttcagatttt 332

                                                                       
Query: 485 gattttctctttcagtagatttgcagttcttgtcatttctgatctgagatctcaatggtc 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 331 gattttctctttcagtagatttgcagttcttgtcatttctgatctgagatctcaatggtc 272

                                                                       
Query: 545 ttttgaattttaaccaacatttcgttcttatccctgggacacacttaagaacagtgtact 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 271 ttttgaattttaaccaacatttcgttcttatccctgggacacacttaagaacagtgtact 212

                  
Query: 605 gactcct 611
           |||||||
Sbjct: 211 gactcct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 611
Length of database: 1011
Length adjustment: 10
Effective length of query: 601
Effective length of database: 1001
Effective search space:   601601
Effective search space used:   601601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no215_g11.g1 MSMg01no215_g11.g1 CHROMAT_FILE:
MSMg01no215_g11.g1 PHD_FILE: MSMg01no215_g11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:42:04 2005
         (645 letters)



>mm_chr12_46638201_46639245
          Length = 1045

 Score = 1201 bits (621), Expect = 0.0
 Identities = 639/645 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attcattttaaatgaataaatgaaatgaagcagtcataaatatttcacacaattatcggg 60
           |||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||
Sbjct: 201 attcattttaaatgaataaatgaaatgaagcagtcataaagatttcaaacaattatcggg 260

                                                                       
Query: 61  aaaatattttaatgtgttatataatgactataagtcataaaagattatggtaaatgcaat 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 aaaatattttaatgtgttatataatgactataagtcataaaagattatggtaaatgcaat 320

                                                                       
Query: 121 atattcatatgtatttgtgtacgtgtacacagaggaagtatggaaagatacattaacatg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 atattcatatgtatttgtgtacgtgtacacagaggaagtatggaaagatacattaacatg 380

                                                                       
Query: 181 tcatagtgtgttttacttggtcctcgtactataaattattttattttaaattgttctctt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcatagtgtgttttacttggtcctcgtactataaattattttattttaaattgttctctt 440

                                                                       
Query: 241 acactgttaaaagtggtcatttcagtgctttcctggttcttgagaagagtgatttcagaa 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 acactgttaaaagtggtcatttcagtgctttcctggttcttgagaagagtgatttcagaa 500

                                                                       
Query: 301 gtcttattcagtgatcatattgtatttcagtatcagcactgacgctgatatatttaggac 360
           |||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||
Sbjct: 501 gtcttattcagtgatcatattgtatttcagtatcagcactgatgttgatatatttaggac 560

                                                                       
Query: 361 tgacattgtcactaagaccctgaagccatttgtataaatgaacattgctttctattctgt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tgacattgtcactaagaccctgaagccatttgtataaatgaacattgctttctattctgt 620

                                                                       
Query: 421 ttaacaaatgattttgaagagaagcccaaattctaagaaaccctaaagatatctacttaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 ttaacaaatgattttgaagagaagcccaaattctaagaaaccctaaagatatctacttaa 680

                                                                       
Query: 481 gagcatagtcttatctgtagataaaatacaagaggaccagattgagaaggaggtgggaag 540
           |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gagcatagtcttatctatagataaaatacaagaggaccagattgagaaggaggtgggaag 740

                                                                       
Query: 541 tgccatgccatcacgcagatgtttaatgttcttttgatagtttaagtttcacatgtctct 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tgccatgccatcacgcagatgtttaatgttcttttgatagtttaagtttcacatgtctct 800

                                                        
Query: 601 aataaaagatgccactgtacgtattagtagcctctatccttttag 645
           |||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 801 aataaaagatgccactgtacgtattagtggcctctatccttttag 845


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 33
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 645
Length of database: 1045
Length adjustment: 10
Effective length of query: 635
Effective length of database: 1035
Effective search space:   657225
Effective search space used:   657225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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