BAC Information

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BAC

Clone NameMSMg01-216L17
Chromosome12 (Build37)
Map Location 59,305,602 - 59,305,889
singlet/doubletsinglet
Overlap genenone
Upstream geneAU021838, LOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761
Downstream geneSstr1, Clec14a, LOC100040183, Sec23a, Sip1, Trappc6b, Pnn, EG544872, Mia2, Mgea6, Fbxo33
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216L17.T7 (MSMg01no216_l17.b1)MSMg01-216L17.TJ (MSMg01no216_l17.g1)
ACCAG396504AG396505
length747689
length of high quality
(start - end)
201 (113 - 313)293 (4 - 296)
definitionCHROMAT_FILE: MSMg01no216_l17.b1 PHD_FILE: MSMg01no216_l17.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:51 2005CHROMAT_FILE: MSMg01no216_l17.g1 PHD_FILE: MSMg01no216_l17.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:43:51 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGNGNGG
AANNNNANAATTAACCAAAAAAAGGGGNNNNNAAANNNNGNGNNNNGGNG
NNNANGNAGANAATTTTTACTCACAAACATTTCTATATGACTGGTAGATT
TTTAAAGAGAATATAGTGGCTTAATTTTTCATAGTATTTGTGCTTTTAAG
ATAAGATCTGGGCATGCAGATCACTTTTGTTAATTCCAAATCTGATGAGG
ACAGAGCAGGTTGAGACAGAAGATAAGATGTTCAAGTAGGTTGTGCTCAG
TGGTTAGAAATGATTTTTTTTGGAATGAAGTCAGATGGACATAGGGGACT
GGACTTTTAATAATTTTCCCNNNGCCAACCCTGAAGGGTGAGATTAGATC
TGGCTGGTTAGAAAGGTTGTATNTGGAATTGAAATGACCCTTGGGTGGGG
GATCAGGTGGTTTTGCGGGGAGGAAGTAAGGACGAGCCATACAGCCAGAA
GGTGGAGAAGGATGTGGGAAATCTGGCTTGGGAGTATGCTTGCATGCATT
GCAGAAGAGACAATTTCTGAGTGAAGTCTACAGGCTGACTTTCTGCACAG
GATGCTGGCACCACATTAGGGCAGGACACTGCACGCATAATCCTGTTATT
ATTTGACACCCTGGACAGCAAGCCCACATTGGTAACAAGGGGAGAATTAC
AGGACAGCATCCCTGTATAGTAATTACCACCCCGTCCTCCACCATCN
GATCCGCGGAATTCTTTCGTCCTTGCTTCTGTTCCATCTACCACTTTCTG
CTGGGTACATTCTGTTTGTTATTCAATTTGCATTGTAATATGTTAATTTC
TCGAATAAATTTATTAGAGTTATTTTCCCTGACAGTCAAAATAATTAAGG
AGGAAAATAAATTAGCAAATGTTTTGTTAAACAGGGCAGACACTTATGGC
CTGGAGTTTTGTTTTAATATTTTGTTTTGTTTTGTTTTGTTTTTGTTTTT
GTTTTTTGTTTTTTATCTTTCACTACCTTCACCTTATTTAAAATGGTANC
TTTAGTCCCCCNNGACCAANCCCAAACTCTCTATGAAAGGTAAATAAGAA
TACTCATGTTCTAAACAAAAATATGATGTGGGAGGCTACTGTTATCTTTG
TAACTGTCTTCCAGGCCTATGTGTACCTAGATGGGGGGTTGGGGGTGGCG
GATGCACTGTTCGTTTCCTCGCCGCGTGTCTCTTATTTCCCACCTGTACT
GTAACTTATGCCCCCTCTCGTAATCTCCACCTCCTTGTCCTTTACCTAAA
ATCTATTTTGTCCGCCGCGTCTTTCACTACTAGTTTTTTAATGAACCGAT
TAACTACCGACTTTTACCCACACCTGTTTTTTTTTTCCACCCTTTTTTTC
TTCCCACTTTATTTTTTTCACCTCATTATCCCCTTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_l17.g1 MSMg01no216_l17.g1 CHROMAT_FILE:
MSMg01no216_l17.g1 PHD_FILE: MSMg01no216_l17.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:43:51 2005
         (293 letters)



>mm_chr12_59305397_59306089
          Length = 693

 Score =  549 bits (284), Expect = e-161
 Identities = 287/288 (99%)
 Strand = Plus / Plus

                                                                       
Query: 6   gaattctttcgtccttgcttctgttccatctaccactttctgctgggtacattctgtttg 65
           ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 206 gaattctttcgtccttgcttctgttccatctaccactttctgctgggtacattttgtttg 265

                                                                       
Query: 66  ttattcaatttgcattgtaatatgttaatttctcgaataaatttattagagttattttcc 125
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 266 ttattcaatttgcattgtaatatgttaatttctcgaataaatttattagagttattttcc 325

                                                                       
Query: 126 ctgacagtcaaaataattaaggaggaaaataaattagcaaatgttttgttaaacagggca 185
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 326 ctgacagtcaaaataattaaggaggaaaataaattagcaaatgttttgttaaacagggca 385

                                                                       
Query: 186 gacacttatggcctggagttttgttttaatattttgttttgttttgttttgtttttgttt 245
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 386 gacacttatggcctggagttttgttttaatattttgttttgttttgttttgtttttgttt 445

                                                           
Query: 246 ttgttttttgttttttatctttcactaccttcaccttatttaaaatgg 293
           ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 446 ttgttttttgttttttatctttcactaccttcaccttatttaaaatgg 493


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 293
Length of database: 693
Length adjustment: 9
Effective length of query: 284
Effective length of database: 684
Effective search space:   194256
Effective search space used:   194256
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)