BAC Information

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BAC

Clone NameMSMg01-216N16
Chromosome12 (Build37)
Map Location 90,228,212 - 90,259,717
singlet/doubletdoublet
Overlap geneNrxn3
Upstream geneLOC100039191, LOC627873, LOC100039162, LOC627881, LOC100039129, LOC636517, LOC544884, LOC100039226, LOC432715, EG667350, LOC546543, EG667388, LOC627971, LOC667395, LOC100039315, EG638008, EG666862, EG435337, LOC100039154, LOC633093, LOC667440, LOC100039383, EG266459, LOC667475, LOC620915, LOC435314, Adck1, LOC100039261, EG666915
Downstream genenone
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-216N16.T7 (MSMg01no216_n16.b1)MSMg01-216N16.TJ (MSMg01no216_n16.g1)
ACCAG396584AG396585
length7261,151
length of high quality
(start - end)		313 (46 - 358)772 (73 - 844)
definitionCHROMAT_FILE: MSMg01no216_n16.b1 PHD_FILE: MSMg01no216_n16.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:02 2005CHROMAT_FILE: MSMg01no216_n16.g1 PHD_FILE: MSMg01no216_n16.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:44:03 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(90,228,212 - 90,228,520)(90,259,061 - 90,259,717)
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTGCTCTCTCCAGATTTATAAATAAATTCTCACTTGACCTATTCCT
TCTTCTATGGAACTTTACTTTTATCTTCATATCGGGTTAATGAGTTGGGG
TGTGGGGCCTGGGGAAATAGGCTTAAGTAAGGTCAAAGTCACATGTGAAT
GTTAAGAGAGGATTGGAAAATAGTGTTCATTTGAGCACCCACTAGGTGCT
CACATTGTTCTCTGGGTATTGGCTGCTTTTTCTGTAGTCTTCTTGACAAT
GTCACAAAAAAGCATAGCTCCTCAGTTTTACTGGTGCAGAGACTGTTAAA
CCCTTAGGTGNATANATGAACCAAGACCANCCCGCTGGGAGACTCCAGAC
TCACTGTCTTTTTTTTTTTCTTTTAAAAAAAGAAATAGCACGCGGGTATT
TCTCCAAATTGTCTTTCACATAGCCTGCACATGTTAGATAGATCTTGTAC
TAGTCACCAAAAGGATGAAATAATTGACATAACACTTGGAGAACAAGTCC
AGGATCTGACACAAAGCCACAGCTCCACAGACAAATAGTCATTATTTTTA
GATTTAATAGTTTATAAGGGAGGCGGCCCTTATAATATGTTTGGAATGTG
CTAACACAGTATCTTTCCTACCTGTTTCTGCCTTTTCATTTCTATCGTCT
TTCATTGTCTTTTTGGCCTTCCTTTT

NNNTTAGTCAAGTGAGCCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTCATCCAACAGGACCAGGAAAAATGAAA
GAGAGAAGCAAAATAAAACATTCTCTCTCTGCTTGCTAAATCTATTTCAC
CTGAGATTTCATGCAGGCTGAGTCACTTATTGTTTAGAGAGGACACCATT
TTCGCTGAGTGCAGAAGGGAAACGAGCCAGCACAGTCGGAGAATAGGGAG
CCCTTGTCCTTTAGCTTAAAATAGGCCCCTTTCCCAAAATAGGCATCAAC
TCTTCCTTTAAGGGACAGCATGGTCATCTGGATCATGAGCTCTCTAGGAG
GAGCAGTGAACTGGAATCTATTTGGTGGGGCCCCATGGAGCCTGTCTACC
TCCAGGTGGAAGTGCAGAACTTTGCAAACCTGAGTAAATCCAACAACTCT
AGATGCAGATCTCCGCCATGAGTGGGAAAGGAATGTGTTTTTTGAGTCTT
CTCCTGCCAGAGGAATCCCCAAGAAGCAGAATTTTTAATTTTTTAATATA
AAAATGAGATGGTTCATAAGAGGCCAGTAGGAAAATGGAAAGTGGTAAAG
GTTTAGGGTTAAGATTCCAAAGTTTAAATCCAGGATTCTCCACACAATAA
ACATATGACCTTGGATGACTAAGTGACTTACCTTCTCTGAGCCTCTAATT
CTTTTAGGAAAGTGTAGCTACTGATACTACTGGCTGAGTCACAGGGAATG
CTAAAGACAGTGCCCAGATGGAGTCAGAAGTCAATCACTGGGCCATAATG
ATGGCTGTCATCAAGGATTTTCTTCACCCTGCCATTCTGGGACTGGGGAA
TATGTTCATCGGGGTTTTATAGAGCCTTCTGTTCTTATAAAATGTGGTTA
TTCCTAAAAAGCCACAATATATTGGGCTAGCAAAGTTAAACTCCCTCCCT
AAGCCTTTTCTTGGGGGGGGAAAAAAAGAGGCTTTTTCTTTTCCCCACAA
ATTAAACTAAAAAGCTAGGGTTGGGACCCGCCAAGGTTGGCCCATTCCAG
GGGGTTTATTTCTCCCCTTGGGGAGGGAAAGAAAAAAAAATTTTTTTTTT
TTAGGCCCCCCCGTCTCTTTAATAAATCTTCCTAATTCCTGGTTTATCAA
A
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no216_n16.b1 MSMg01no216_n16.b1 CHROMAT_FILE:
MSMg01no216_n16.b1 PHD_FILE: MSMg01no216_n16.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:02 2005
         (313 letters)



>mm_chr12_90228008_90228720
          Length = 713

 Score =  590 bits (305), Expect = e-173
 Identities = 308/309 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctgctctctccagatttataaataaattctcacttgacctattccttcttctatg 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctgctctctccagatttataaataaattctcacttgacctattccttcttctatg 264

                                                                       
Query: 65  gaactttacttttatcttcatatcgggttaatgagttggggtgtggggcctggggaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 gaactttacttttatcttcatatcgggttaatgagttggggtgtggggcctggggaaata 324

                                                                       
Query: 125 ggcttaagtaaggtcaaagtcacatgtgaatgttaagagaggattggaaaatagtgttca 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 ggcttaagtaaggtcaaagtcacatgtgaatgttaagagaggattggaaaatagtgttca 384

                                                                       
Query: 185 tttgagcacccactaggtgctcacattgttctctgggtattggctgctttttctgtagtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tttgagcacccactaggtgctcacattgttctctgggtattggctgctttttctgtagtc 444

                                                                       
Query: 245 ttcttgacaatgtcacaaaaaagcatagctcctcagttttactggtgcagagactgttaa 304
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 445 ttcttgacaatgtcacaaaaaagcatagctccccagttttactggtgcagagactgttaa 504

                    
Query: 305 acccttagg 313
           |||||||||
Sbjct: 505 acccttagg 513


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no216_n16.g1 MSMg01no216_n16.g1 CHROMAT_FILE:
MSMg01no216_n16.g1 PHD_FILE: MSMg01no216_n16.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:03 2005
         (772 letters)



>mm_chr12_90259061_90260232
          Length = 1172

 Score = 1224 bits (633), Expect = 0.0
 Identities = 651/657 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcatccaacaggaccaggaaaaatgaaagagagaagcaaaataaaacattctctctctgc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 657 tcatccaacaggaccaggaaaaatgaaagagagaagcaaaataaaacattctctctctgc 598

                                                                       
Query: 61  ttgctaaatctatttcacctgagatttcatgcaggctgagtcacttattgtttagagagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 597 ttgctaaatctatttcacctgagatttcatgcaggctgagtcacttattgtttagagagg 538

                                                                       
Query: 121 acaccattttcgctgagtgcagaagggaaacgagccagcacagtcggagaatagggagcc 180
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 537 acaccatttttgctgagtgcagaagggaaacgagccagcacagtcggagaatagggagcc 478

                                                                       
Query: 181 cttgtcctttagcttaaaataggcccctttcccaaaataggcatcaactcttcctttaag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 477 cttgtcctttagcttaaaataggcccctttcccaaaataggcatcaactcttcctttaag 418

                                                                       
Query: 241 ggacagcatggtcatctggatcatgagctctctaggaggagcagtgaactggaatctatt 300
           |||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||
Sbjct: 417 ggacagcatggtcatctggatcatgagctctcaaggaggagcagtgaactggaatttatt 358

                                                                       
Query: 301 tggtggggccccatggagcctgtctacctccaggtggaagtgcagaactttgcaaacctg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 357 tggtggggccccatggagcctgtctacctccaggtggaagtgcagaactttgcaaacctg 298

                                                                       
Query: 361 agtaaatccaacaactctagatgcagatctccgccatgagtgggaaaggaatgtgttttt 420
           ||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||
Sbjct: 297 agtaaatccaacaactctagatgcagatctctgccatgagtgggaaagaaatgtgttttt 238

                                                                       
Query: 421 tgagtcttctcctgccagaggaatccccaagaagcagaatttttaattttttaatataaa 480
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 237 tgagtcttctcctgccagaggaatccctaagaagcagaatttttaattttttaatataaa 178

                                                                       
Query: 481 aatgagatggttcataagaggccagtaggaaaatggaaagtggtaaaggtttagggttaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 aatgagatggttcataagaggccagtaggaaaatggaaagtggtaaaggtttagggttaa 118

                                                                       
Query: 541 gattccaaagtttaaatccaggattctccacacaataaacatatgaccttggatgactaa 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 117 gattccaaagtttaaatccaggattctccacacaataaacatatgaccttggatgactaa 58

                                                                    
Query: 601 gtgacttaccttctctgagcctctaattcttttaggaaagtgtagctactgatacta 657
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 57  gtgacttaccttctctgagcctctaattcttttaggaaagtgtagctactgatacta 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 772
Length of database: 1172
Length adjustment: 10
Effective length of query: 762
Effective length of database: 1162
Effective search space:   885444
Effective search space used:   885444
X1: 9 (17.8 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 9 (18.3 bits)
S2: 9 (18.1 bits)


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