TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCACTCATATGTGTATCATGAACACACCACACACACAAGGAATAGAG
GAAGAGTGATAGAGTAGGTCACCTGATATCTACCTGACCTTCACATGTAT
CCAGGGGAAACTAGCCTGCATACCCTCATTTGTGCATATAATATACATAC
TCATGAATTCATACATATAAACGATTAAAAATTCAAACGGCTAGATCTCA
TATTAGTACAAAAGAGTGTCATAACAATATGCTCTATGCCCTAGTTGTCT
GACATTTATACAAGTACAATAAATGAAATTTTGAAGATTTCTTTATCCCT
ATTTTTTGTTATTGCCCTCCCCCCCCCCCCATGAGGAAATATGCAGTGAA
TTTTTATCTCAGGATACAAGCTAGCACACTGGGTTTTAACACCTTTAGTA
TACATGTATAGTCAACAATCTCTATGTGGCATTTGAAGAACTTTTAGAAA
TAATTGGTAAATTTGGAGAAGAGACAGAATCAGGTATTATGCTTTGAGAA
ACAGCATAAAAAGTTTGAATTATATTAGATGATTATCAGTGGAATTTTTG
TTGTAAACTACTAATCAAACTCAAAACAATTTGAATATACTCTAGTTTAC
TCATCTCTAATTATGGAGAAAAACATAATATATTACATGGAAAAATGCCT
GTATGGTGGGCATTGCCTTAATTTGGA

CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATAAAAGTTAATGTCAAACCATT
CTATAGATTTAGTATGTATAGATTCTATAGATTTAGTATACAGCACTTAC
TGCAGAGCAGGCCTTCATTAACATAAACTCTCCAATTTTTAATATAAAAT
GCTACATATTTTGTTCCAAGTTAGATTAACAACTGTCATTTTATCAGTGT
AATATCTATTTTACTGAAAGCATCTTAGAAATATACATTTAAAATGATTT
AATGTGTTAATACTAATCATCAACACCCTAATTATAGATATCTCCTCTTT
ATAAAATATTTTTATACTCCCCCCACCCCCCGCATTTGTGGGTCATATGC
ATCTATCTGGAAGCACTCTCAAATGCATGCTGAAAAATCACTAATGTTTT
AACAATTAGGTTCCTATAGAATTCAGGTTTGACCTCGTGACTTTTCAATG
AAAAGAAAAAGAACAGAAAAAAAAAATCATTCTTGTTGTTACCTCATCTC
ATCATAAGACTGATTTAATCTTATTTAAAAATATCTTAGCATTTAAGTTT
TTAATATCAAGCCATAATAATTTATTCATTTTCATTCATTTAAAATTTTA
AATATTTTTCATGTAGTAGGATTTGATATGTGAATACTGTAGTGGTATAA
AAAGAACCAGAAAGCAAATCTTAGAGAGA

Query= MSMg01no216_p11.b1 MSMg01no216_p11.b1 CHROMAT_FILE:
MSMg01no216_p11.b1 PHD_FILE: MSMg01no216_p11.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:12 2005
         (297 letters)



>mm_chr12_39849614_39850310
          Length = 697

 Score =  574 bits (297), Expect = e-168
 Identities = 297/297 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   gggttttaacacctttagtatacatgtatagtcaacaatctctatgtggcatttgaagaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gggttttaacacctttagtatacatgtatagtcaacaatctctatgtggcatttgaagaa 260

                                                                       
Query: 61  cttttagaaataattggtaaatttggagaagagacagaatcaggtattatgctttgagaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cttttagaaataattggtaaatttggagaagagacagaatcaggtattatgctttgagaa 320

                                                                       
Query: 121 acagcataaaaagtttgaattatattagatgattatcagtggaatttttgttgtaaacta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acagcataaaaagtttgaattatattagatgattatcagtggaatttttgttgtaaacta 380

                                                                       
Query: 181 ctaatcaaactcaaaacaatttgaatatactctagtttactcatctctaattatggagaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctaatcaaactcaaaacaatttgaatatactctagtttactcatctctaattatggagaa 440

                                                                    
Query: 241 aaacataatatattacatggaaaaatgcctgtatggtgggcattgccttaatttgga 297
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaacataatatattacatggaaaaatgcctgtatggtgggcattgccttaatttgga 497


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 297
Length of database: 697
Length adjustment: 9
Effective length of query: 288
Effective length of database: 688
Effective search space:   198144
Effective search space used:   198144
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no216_p11.g1 MSMg01no216_p11.g1 CHROMAT_FILE:
MSMg01no216_p11.g1 PHD_FILE: MSMg01no216_p11.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:44:12 2005
         (284 letters)



>mm_chr12_39955524_39956207
          Length = 684

 Score =  530 bits (274), Expect = e-155
 Identities = 280/282 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tataaaagttaatgtcaaaccattctatagatttagtatgtatagattctatagatttag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 tataaaagttaatgtcaaaccattctatagatttagtatgtatagattctatagatttag 423

                                                                       
Query: 61  tatacagcacttactgcagagcaggccttcattaacataaactctccaatttttaatata 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 422 tatacagcacttactgcagagcaggccttcattaacataaactctccaatttttagtata 363

                                                                       
Query: 121 aaatgctacatattttgttccaagttagattaacaactgtcattttatcagtgtaatatc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 362 aaatgctacatattttgttccaagttagattaacaactgtcattttatcagtgtaatatc 303

                                                                       
Query: 181 tattttactgaaagcatcttagaaatatacatttaaaatgatttaatgtgttaatactaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tattttactgaaagcatcttagaaatatacatttaaaatgatttaatgtgttaatactaa 243

                                                     
Query: 241 tcatcaacaccctaattatagatatctcctctttataaaata 282
           ||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 242 tcaccaacaccctaattatagatatctcctctttataaaata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 284
Length of database: 684
Length adjustment: 9
Effective length of query: 275
Effective length of database: 675
Effective search space:   185625
Effective search space used:   185625
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)