BAC Information

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BAC

Clone NameMSMg01-217L21
Chromosome12 (Build37)
Map Location 74,769,903 - 74,890,092
singlet/doubletdoublet
Overlap genePrkch
Upstream geneLOC100041157, 5033425G24Rik, Ppm1a, Six6os1, Six6, LOC100041234, Six1, Six4, Mnat1, Trmt5, Slc38a6, EG666356, Tmem30b, 2210039B01Rik
Downstream geneEG666385, LOC100041489, Hif1a, EG277089, Snapc1, Syt16, 1700086L19Rik, Dbpht2, LOC671971
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-217L21.T7 (MSMg01no217_l21.b1)MSMg01-217L21.TJ (MSMg01no217_l21.g1)
ACCAG397163AG397164
length736733
length of high quality
(start - end)
322 (39 - 360)287 (72 - 358)
definitionCHROMAT_FILE: MSMg01no217_l21.b1 PHD_FILE: MSMg01no217_l21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:28 2005CHROMAT_FILE: MSMg01no217_l21.g1 PHD_FILE: MSMg01no217_l21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:45:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(74,769,903 - 74,770,131)(74,889,807 - 74,890,092)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTC
TTAGAGTTTTCCTCTTGGAGTCATTTCTCCTCCAAAGCTCTGCCTGCCTC
CAGGACTGACAGCCCTTCTTTCCTCTGGCGTATTCTGACTCTGAAGACAT
GGAGCAGAAATGGAAGTGTTCTCATCTCCAAGAAGTTCCCAGAAGAGAAG
GCTCTGAGAGCTTTATAGTGGGGTACTGGGCCCTAAGATTCTGGGACAAG
AGGAAAAGTCCACCCAATATCCTGCTACGTTTAAACTAAAAAGGACCTAG
TAGCTTCCTATGCCCTGTTTAGGGTTTTCCCAGAAATTCTTCCATTTTCC
CCTTCTCATGTCTTTTATACTCGCCCATCAGCCGCTGGGATTTTAAACCC
TTTATTAATCTCTGCAGGCGGCTTCACCCACTATAGGAGCCAGCCTCTTC
CTTATACATGGGCTTCTTTGAAAGGGTTTTCGTCAGGCTATCTGAACCCC
ACAGTGCTTTAGCAAATAGAATCTTTATTACTCCCCCCTTGGGCAGCCTT
CCCTGATGTCTCATTCTCAGCGGATGGGAAGTGTTTCATTCCTAATGCCG
AGGGAACAAATCCACACATAGTGGCTTCCAGGCTTTGAACCCTTTGATTA
GGACGACCACCACTAACTTCCCCCAGAGTCCCGCCGACGCTTCTTTCTTG
TTTATCAATCATATACTTCTTCTAACAATAGAATTC
GTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXGGGTGCTAACACTCTGAGAAGGCAGTGAG
CCAGAAGGGAGGTTTGTCGAGCCCGTGACTCTGCAGAGCTTATCCACAGC
ACATGGTGCTCCTCACAGGGCCTGGTCTGGTGCTTTAATGGGGTGCAAGA
TAAACAGAGAAGCCCCCTTAGGCCATGTCTTATCTTGAGGAGGGTGGTAA
AAACTTTAACTCTCTCCTCCCCACCCTTTACTTCCGGGCCATTTCTTCAA
TGCTTCATCCAAGACTTCATTCCAAACAGCTGTGTATCTGACCTCTGAGA
ACGCTTCTTCTTTATATGCCCCCCCCCCCCACAATTGCATCTGTAAGCAT
TATATTTACATCATCCTACCTACCTTTCCATCTCCTCCTGGCAACTCTTC
CCATGTACGTGCACACACACATACCTACCTCACTGAGTCCATTTAGTGTT
CCTCTTATGTAGGTGGATGTTTGGGGTTGGCCACTTGGAACTGGAAAACC
CATCTCCAGGAGTTTTATCCCTGGAGAAAACTTACTTATCTTCTCTTAGA
AGACATTGATCACCTGTAACTCTCCATCTGCCTTGTGAAATTTGCCTCAT
CCTCTCTATCATCTCAACAGGTGTTGTCAATATGCAGGTATTAAAGGCAA
CCATTATTATTGAGATTTATGGATGTATTATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no217_l21.b1 MSMg01no217_l21.b1 CHROMAT_FILE:
MSMg01no217_l21.b1 PHD_FILE: MSMg01no217_l21.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:28 2005
         (322 letters)



>mm_chr12_74769699_74770420
          Length = 722

 Score =  435 bits (225), Expect = e-126
 Identities = 228/229 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattctcttagagttttcctcttggagtcatttctcctccaaagctctgcctgcctcca 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattctcttagagtttccctcttggagtcatttctcctccaaagctctgcctgcctcca 264

                                                                       
Query: 65  ggactgacagcccttctttcctctggcgtattctgactctgaagacatggagcagaaatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ggactgacagcccttctttcctctggcgtattctgactctgaagacatggagcagaaatg 324

                                                                       
Query: 125 gaagtgttctcatctccaagaagttcccagaagagaaggctctgagagctttatagtggg 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 gaagtgttctcatctccaagaagttcccagaagagaaggctctgagagctttatagtggg 384

                                                            
Query: 185 gtactgggccctaagattctgggacaagaggaaaagtccacccaatatc 233
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 gtactgggccctaagattctgggacaagaggaaaagtccacccaatatc 433


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 322
Length of database: 722
Length adjustment: 9
Effective length of query: 313
Effective length of database: 713
Effective search space:   223169
Effective search space used:   223169
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no217_l21.g1 MSMg01no217_l21.g1 CHROMAT_FILE:
MSMg01no217_l21.g1 PHD_FILE: MSMg01no217_l21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:45:28 2005
         (287 letters)



>mm_chr12_74889607_74890293
          Length = 687

 Score =  545 bits (282), Expect = e-160
 Identities = 285/286 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gggtgctaacactctgagaaggcagtgagccagaagggaggtttgtcgagcccgtgactc 60
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 486 gggtgctaacactctgagaaggcagtgagccagaagggaggtttgttgagcccgtgactc 427

                                                                       
Query: 61  tgcagagcttatccacagcacatggtgctcctcacagggcctggtctggtgctttaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 426 tgcagagcttatccacagcacatggtgctcctcacagggcctggtctggtgctttaatgg 367

                                                                       
Query: 121 ggtgcaagataaacagagaagcccccttaggccatgtcttatcttgaggagggtggtaaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 366 ggtgcaagataaacagagaagcccccttaggccatgtcttatcttgaggagggtggtaaa 307

                                                                       
Query: 181 aactttaactctctcctccccaccctttacttccgggccatttcttcaatgcttcatcca 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 306 aactttaactctctcctccccaccctttacttccgggccatttcttcaatgcttcatcca 247

                                                         
Query: 241 agacttcattccaaacagctgtgtatctgacctctgagaacgcttc 286
           ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 246 agacttcattccaaacagctgtgtatctgacctctgagaacgcttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 287
Length of database: 687
Length adjustment: 9
Effective length of query: 278
Effective length of database: 678
Effective search space:   188484
Effective search space used:   188484
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)