BAC Information

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BAC

Clone NameMSMg01-218C21
Chromosome12 (Build37)
Map Location 36,617,650 - 36,617,937
singlet/doubletsinglet
Overlap genenone
Upstream genePrps1l1, Snx13, Ahr, LOC100043575, LOC629758, LOC100043579, LOC669866
Downstream geneAgr3, Agr2, Tspan13, EG432649, Bzw2, Ankmy2, 1700108M19Rik, Sostdc1, 4930579E17Rik, LOC638858
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-218C21.T7 (MSMg01no218_c21.b1)MSMg01-218C21.TJ (MSMg01no218_c21.g1)
ACCAG397445AG397446
length754782
length of high quality
(start - end)
321 (47 - 367)289 (78 - 366)
definitionCHROMAT_FILE: MSMg01no218_c21.b1 PHD_FILE: MSMg01no218_c21.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:07 2005CHROMAT_FILE: MSMg01no218_c21.g1 PHD_FILE: MSMg01no218_c21.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:46:07 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
AATCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCG
GAATTCAAGTCCCATACCTAAACATGATAAAAGCAATCTACAGCAAACCA
GTAGCCAACATCAAAGTAAATGGAGAGCAGCTGGAAGCAATCCCACTAAA
ATCAGGGACTAGACAAGGCTGCCCACTTTCTCCCTACCTTTTCAACATAG
TACTTGAAGTATTAGCCAGAGCAATTCGACAACAAAAGGAGATCAAGGGG
ATACAAATTGGAAAGGAGGAAGTCAAAATATCACTTTTTGCAGATGATAT
GATAGTATATATAAGTGACCCTAAAAATTCCACCAGAGAACTCCTAAACC
TGATAAACAGCTTCGGTGATTTATCTGCCCCCCCCACTAACTCAAACAAG
TCAATGGCCTTTCTCTACNCCAAGAATAAACAGGCTGAGAAAGAAATTAG
GGAAACAACAACCTTCTCAATAGTCACACATGATATAAAATATCTCGGCA
TGACTCTAACTAAGAAAGTGAAAGATCTGTATGATAAAAACTTCAAGTCT
CTGAAGAAAGAAATTAAAGAAGATCTCAGAAGATGGAAAGATCTCCCATG
CTCATGGATTGGCAGGATCAACATTGTAAAAATGGCTATCTTGCCAAAAG
CAATCTACAGATTCAATGCAATCCCCATCAAAATTCCAACTCAATTCTTC
AACGAATTAGAAGGAGCAATTTGAAAATTCATCTGGAATAACAAAAAACC
TAGG
ACGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXAGTCAGAGCACTCATCCCTTTGT
GACCAGCGATCTCATTACTTCGGAAGGGTGCTTGCTGCCTTTATCCGTTT
TGTGCCTGTGATAGGAAACAGTGAGCTGAAGATTCAGTTGCTTTGTGAAC
AAGGAATCTGAAGCCAGCTACTCTTTTGAACGAGCTTTAATAGGAGAGAG
ACCCTATCGACTGTGGGGGCCATGATCAGGTCTTGAGGTAGGCGGCCATT
TAGGAGGCTACAGCATGTTGCTAGAGAAAGCATGCTTAAAGAGAAAGAAA
GGCTTCTCTTTAAGATCTCCTAGTCCNTTCCTGAACCCAGATGAGTGAGA
AAGCAATAGCTGGTGTGAATGACAGGGTGGAAAAAACAGAAAGGGGAAGG
CAGAGAGGAGGGAGAAGGAAGGGAAGAGGGAGAGGAAAGGGAGAAAGAGG
ATTACACTCCTATTGTCTCTCTTTTTTTTATTCCTCTTCTATCTCCTCTC
TTCTTTCTCTTTTATTCGTCCACTCCTTTAGTCAATTTTTTTCTCTCATC
ACCTCCTATAACATATACTTGTTTGTTTACGCTTTTCACCCCGCTTACTT
ACACTTCTAATATTATTTCCCGATCTCCCAGAACACTTCATCCGTTATCT
ATACTACTCTCTTTTATGCTCTCTTATCCTCTCTCTCTATTCTACTCCAC
TACACCCTTTCCCCTCCTCAGTATATAACTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no218_c21.g1 MSMg01no218_c21.g1 CHROMAT_FILE:
MSMg01no218_c21.g1 PHD_FILE: MSMg01no218_c21.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:46:07 2005
         (289 letters)



>mm_chr12_36617450_36618138
          Length = 689

 Score =  534 bits (276), Expect = e-156
 Identities = 285/288 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   agtcagagcactcatccctttgtgaccagcgatctcattacttcggaagggtgcttgctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 488 agtcagagcactcatccctttgtgaccagcgatctcattacttcggaagggtgcttgctg 429

                                                                       
Query: 61  cctttatccgttttgtgcctgtgataggaaacagtgagctgaagattcagttgctttgtg 120
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 428 cttttatccgttttgtgcctgtgataggaaacagtgagctgaagattcagttgctttgtg 369

                                                                       
Query: 121 aacaaggaatctgaagccagctactcttttgaacgagctttaataggagagagaccctat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 368 aacaaggaatctgaagccagctactcttttgaacgagctttaataggagagagaccctat 309

                                                                       
Query: 181 cgactgtgggggccatgatcaggtcttgaggtaggcggccatttaggaggctacagcatg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 308 cgactgtgggggccatgatcaggtcttgaggtaggcggccatttaggaggctacagcatg 249

                                                           
Query: 241 ttgctagagaaagcatgcttaaagagaaagaaaggcttctctttaaga 288
           ||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct: 248 ttgctagagaaagcatgcttaaagagaaagaaaggcttccccttaaga 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 689
Length adjustment: 9
Effective length of query: 280
Effective length of database: 680
Effective search space:   190400
Effective search space used:   190400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)