BAC Information

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BAC

Clone NameMSMg01-231D23
Chromosome12 (Build37)
Map Location 38,840,527 - 38,841,227
singlet/doubletsinglet
Overlap geneDgkb
Upstream geneMeox2, A530016O06Rik, LOC100043139
Downstream geneLOC668824, LOC100043142, Etv1, LOC100043145
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231D23.T7 (MSMg01no231_d23.b1)MSMg01-231D23.TJ (MSMg01no231_d23.g1)
ACCAG398126AG398127
length737736
length of high quality
(start - end)
690 (46 - 735)295 (74 - 368)
definitionCHROMAT_FILE: MSMg01no231_d23.b1 PHD_FILE: MSMg01no231_d23.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:29 2005CHROMAT_FILE: MSMg01no231_d23.g1 PHD_FILE: MSMg01no231_d23.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:47:29 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTTATTTATGGTGTTGGCAAATACTTGACAAAATATGTATTTTGTG
AGTGATTATTTAAACCTGATATATTAATCATAATAAGACAGACTCACATT
GCTTCTTCAGTTTTCATGAAAGGGCAATTCTGGATATATATATATATATA
TATATATATATATATATAAAGCTTTTGTCACTGACTAATACAAAGAAAGG
AAGATTAGCAATGGGTTCCTTGTGTGATATTTCTTTACATTTTCTTACAC
ACCGAGGATGCTAAGCTCACTCTCACATCCTTCATTGGTAGACTGCTTAG
CCCCTGCCAATGGACTCTGTAAACATTCCTGTTTGCAGCATTCACAGCAT
ACATGGAAAGTTACTATATTGGTGTTCTAGTGCATTTGATTGTCTTATAC
TTAATAAAGACACACCACACACAGACATATACATGCACACACACACACAC
ACACACACACACACACACACACGTGTTCACAATATCTAGTGCAATTTCTT
TTGGTCATTTCATACTTGAGAGCACAGTGAATATTTTAGAATATTTTAAA
TATTTGAGTATAAATGTTTTTTTCCAGGTCTCAGGATGAATAAGGGTGCC
ATCACCCCTCCACGTTCCTCTCCAGCAAATACATGCTCCCCAGAAGTGAT
CCACCTCAAGGATATCGTCTGCTACCTGTCTCTTCTN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXTTAGGCCTGTGGGACTGGTTTGTGTGA
GGAATATGAGACATTTCAGCTGCTTGATACAAAATCCCTAACATGCTGCA
ACCAGAAATTAATGGACCATATGGCCAGGACCTTGAAAGATAAAAGTGCT
GGCAAAACAACACAGTGAAAGCATTGCTTAAGTGGTTTAAGAGTAGGGTA
AATACACTATAGAGACATGACCTTGGGGCCATTCATATTTGATTCTGGTC
AAAGTACTTTGGAGCATATATGATGACATCGTGAGTAAGATACCAGACAC
TGAGCGCAGTATTTGATGTTTGCACACCCCCCCACCGTTCTTACTCCGGT
CTGATCTTTCCTTGCTATAGCTCAATGATCACTTTTTCTAATGGGAACAT
GTATCATGTACCATTGTCTATGTGAACTGTGCAATTATTTTTAAATCTAG
GAGGTCACAGTTAATAAATTGCAATGAGTCTCAGAAAAGGACTTTAAAAC
TTTTAGGAACTGCTGAAGAGTAAGGTAGCTTAATGTTGGTCTGAATGCAT
TCTATATTAGGAGATGATGGAAAGCCTGCAGAGGATAGGGTGGGAGAAGT
GTATGATTCAGAGATACTTCAAATGTNCAGATGACAAGGGATGAAGTTTT
CATGGTAAAGTCTTTTTCATAAACTTGATGGAATCT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_d23.b1 MSMg01no231_d23.b1 CHROMAT_FILE:
MSMg01no231_d23.b1 PHD_FILE: MSMg01no231_d23.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:47:29 2005
         (690 letters)



>mm_chr12_38840344_38841433
          Length = 1090

 Score = 1228 bits (635), Expect = 0.0
 Identities = 677/709 (95%), Gaps = 30/709 (4%)
 Strand = Plus / Plus

                                                                       
Query: 4   ggaattcttatttatggtgttggcaaatacttgacaaaatatgtattttgtgagtgatta 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ggaattcttatttatggtgttggcaaatacttgacaaaatatgtattttgtgagtgatta 243

                                                                       
Query: 64  tttaaacctgatatattaatcataataagacagactcacattgcttcttcagttttcatg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 tttaaacctgatatattaatcataataagacagactcacattgcttcttcagttttcatg 303

                                                                       
Query: 124 aaagggcaattctggatatatatatatatatatatatatatatatatata---------- 173
           ||||||||||||||||||||||||||||||||||||||||||||||||||          
Sbjct: 304 aaagggcaattctggatatatatatatatatatatatatatatatatatatatatatata 363

                                                                       
Query: 174 ----------aagcttttgtcactgactaatacaaagaaaggaagattagcaatgggttc 223
                     ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 tatatatataaagcttttgtcactgactaatacaaagaaaggaagattagcaatgggttc 423

                                                                       
Query: 224 cttgtgtgatatttctttacattttcttacacaccgaggatgctaagctcactctcacat 283
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 424 cttgtgtgatatttctttacattttcttacacaccgaggatgctaagctcactctcacat 483

                                                                       
Query: 284 ccttcattggtagactgcttagcccctgccaatggactctgtaaacattcctgtttgcag 343
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 484 ccttcattggtagactgcttagcccctgccaatggactctggaaacattcctgtttgtag 543

                                                                       
Query: 344 cattcacagcatacatggaaagttactatattggtgttctagtgcatttgattgtcttat 403
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 544 cattcacagcatacatggaaagttactatattggtgttctagtgcatttgattgtcttat 603

                                                                       
Query: 404 acttaataaagacacaccacacacagacatatacatgcacacacacacacacacacacac 463
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 acttaataaagacacaccacacacagacatatacatgcacacacacacacacacacacac 663

                                                                       
Query: 464 acacacacacacacgtgttcacaatatctagtgcaatttcttttggtcatttcatacttg 523
           ||||||        ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 acacac--------gtgttcacaatatctagtgcaatttcttttggtcatttcatacttg 715

                                                                       
Query: 524 agagcacagtgaatattttagaatattttaaatatttgagtataaatgttttttt--cca 581
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||
Sbjct: 716 agagcacagtgaatattttagaatattttaaatatttgagtataaatgtttttttttcca 775

                                                                       
Query: 582 ggtctcaggatgaataagggtgccatcacccctccacgttcctctccagcaaatacatgc 641
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 776 ggtctcaggatgaataagggtgccatcacccctccacgttcctctccagcaaatacatgc 835

                                                            
Query: 642 tccccagaagtgatccacctcaaggatatcgtctgctacctgtctcttc 690
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 836 tccccagaagtgatccacctcaaggatatcgtctgctacctgtctcttc 884



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 354 atatatatatatatatatatatatatatatatata 320



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 356 atatatatatatatatatatatatatatatatata 322



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 358 atatatatatatatatatatatatatatatatata 324



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 360 atatatatatatatatatatatatatatatatata 326



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 362 atatatatatatatatatatatatatatatatata 328



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 364 atatatatatatatatatatatatatatatatata 330



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 366 atatatatatatatatatatatatatatatatata 332



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 368 atatatatatatatatatatatatatatatatata 334



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 370 atatatatatatatatatatatatatatatatata 336



 Score = 68.4 bits (35), Expect = 2e-15
 Identities = 35/35 (100%)
 Strand = Plus / Minus

                                              
Query: 139 atatatatatatatatatatatatatatatatata 173
           |||||||||||||||||||||||||||||||||||
Sbjct: 372 atatatatatatatatatatatatatatatatata 338



 Score = 66.5 bits (34), Expect = 7e-15
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                             
Query: 139 atatatatatatatatatatatatatatatatat 172
           ||||||||||||||||||||||||||||||||||
Sbjct: 352 atatatatatatatatatatatatatatatatat 319



 Score = 66.5 bits (34), Expect = 7e-15
 Identities = 34/34 (100%)
 Strand = Plus / Minus

                                             
Query: 140 tatatatatatatatatatatatatatatatata 173
           ||||||||||||||||||||||||||||||||||
Sbjct: 373 tatatatatatatatatatatatatatatatata 340


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 102
Number of extensions: 40
Number of successful extensions: 40
Number of sequences better than 10.0: 1
Number of HSP's gapped: 21
Number of HSP's successfully gapped: 15
Length of query: 690
Length of database: 1090
Length adjustment: 10
Effective length of query: 680
Effective length of database: 1080
Effective search space:   734400
Effective search space used:   734400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)