BAC Information

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BAC

Clone NameMSMg01-231K15
Chromosome12 (Build37)
Map Location 15,841,795 - 15,842,082
singlet/doubletsinglet
Overlap geneEG432636
Upstream geneLOC668492, LOC100042426, LOC217409, Trib2, LOC100043268
Downstream geneLOC100043273, Lpin1, Ntsr2, Greb1, E2f6
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231K15.T7 (MSMg01no231_k15.b1)MSMg01-231K15.TJ (MSMg01no231_k15.g1)
ACCAG398410AG398411
length736739
length of high quality
(start - end)
316 (46 - 361)291 (77 - 367)
definitionCHROMAT_FILE: MSMg01no231_k15.b1 PHD_FILE: MSMg01no231_k15.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:00 2005CHROMAT_FILE: MSMg01no231_k15.g1 PHD_FILE: MSMg01no231_k15.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:00 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCAGGGAAGTCTCTGGCCAAGCAGCCTGGCAAAATGGTGAGTGAACT
TCAGGTTCACTGAGAGACCCTGTTTCAAAGAATAGGGTGGAGAGAGCAGA
TTCCTGACTCCAACCCTACCTCAACTCTGGCTACACACACACACACACAC
ACACACACACACACACACACACACACACAAAGATCCTACATACAAACACA
TACACACACACACACAAACACATATATACGTACACAAATAAACACATACA
CACATATCCTACACATACAAACATATACACTCATACATACACACACACAC
AAGCATGAGGGGTTCTCATAAACCCCTACAGACCCCTGTGAGGAAAATAT
TTGAACAATATAAGAAAACCACCACAAGTATTCAACGTGAAGCCCTGGTG
TTATAATGATGCTAACTGTAAAAGGTCATGTATACTATTTCACAGAATTC
TAATTAGGAAGTAGTGAAGGAGAGAATCTACAAAGTTCACTATCAAATGT
TCGTGACATTCATAAAGAATGGTGACAAAGATCGAGTTAAACTCTGACAG
AAGGAAAGGTAGAAAGCATTGTGCTTGTGATATGCTAATAAAATACAATT
AAAATGTCATTATCTCTGGATAGGAATGAATTCAAGGTCAGCTGAAAAGC
CAGGCTGGGGGACAATTCTGGATTTAAGAGCACTTG
CCGATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTCTTTACAGTCACGCCAAGGATGC
CCAGCTCCAATCTTGGCTCTTACTTGACACAAATACTTAACCCAGTCAGC
CTCAGATTCCATTTCCTGCCTGTCACAGGATCAGCATAAGGGCCTAATGA
GGTAATATATGTCAGGTTGCTAGGAAGAGCCTGATATGGATTAATAGTCC
CCTCCTCTCAGCTCTTTCTCAAAGGGTCATTATGCTTCTCAGAATTGATT
TAAACTGCAAGACTAAGGAAGAAATGAGACATCTCTATTTTTTTGAGCAT
ACTATACTGTTTTTATTTTTACTTCTCCCCCCCCCCCAGAGACCTCTATA
CATAATAGAAAGCCCAAGAGACCCCGCCATTTATAGGATACATCAAAATT
GTCAATTTTTTTTTAAAATTTGGGAATGGATGCTCCCATGTGTCACTTAC
ACATGCAAGGAACACATAGTTTCCCACTGCCAATTATCCTTTTCAGCTTT
TGTAGCAGATTCTGCTATTGGCATAGCCAGCAGCTGTCCTTCTACCCTTC
CATGATGGTCAAATGCAGTTCTCTCCAAAGAGGTTGAAATGCCAATATTC
ATTTCTCAGAGTCCTATGCAAAAACNAAAATAAACAAACAAAACCAGGAT
TATATCTATGTTATAATAAGCTGATCGTTGGATTATGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_k15.g1 MSMg01no231_k15.g1 CHROMAT_FILE:
MSMg01no231_k15.g1 PHD_FILE: MSMg01no231_k15.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:00 2005
         (291 letters)



>mm_chr12_15841595_15842284
          Length = 690

 Score =  513 bits (265), Expect = e-150
 Identities = 283/289 (97%), Gaps = 1/289 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctttacagtcacgccaaggatgcccagctccaatcttggctcttacttgacacaaatac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctttacagtcacgccaaggatgcccagctccaatcttggctcttacttgacacaaatac 260

                                                                       
Query: 61  ttaacccagtcagcctcagattccatttcctgcctgtcacaggatcagcataagggccta 120
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 261 ttaacccagtcagcctcagattccatttccagcctgtcacaggatcagcataagggccta 320

                                                                       
Query: 121 atgaggtaatatatgtcaggttgctaggaagagcctgatatggattaatagtcccctcct 180
           |||||||||||||||||||||||||||||||||||||||||||| ||||| |||| ||||
Sbjct: 321 atgaggtaatatatgtcaggttgctaggaagagcctgatatggactaatattccc-tcct 379

                                                                       
Query: 181 ctcagctctttctcaaagggtcattatgcttctcagaattgatttaaactgcaagactaa 240
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 380 ctcagctctttctcaaagggtcattacgcttctcagaattgatttaaactgcaagactaa 439

                                                            
Query: 241 ggaagaaatgagacatctctatttttttgagcatactatactgttttta 289
           |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 ggaagaaaagagacatctctatttttttgagcatactatactgttttta 488


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 291
Length of database: 690
Length adjustment: 9
Effective length of query: 282
Effective length of database: 681
Effective search space:   192042
Effective search space used:   192042
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)