Query= MSMg01no231_l09.b1 MSMg01no231_l09.b1 CHROMAT_FILE:
MSMg01no231_l09.b1 PHD_FILE: MSMg01no231_l09.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:03 2005
(315 letters)
>mm_chr12_84944651_84945365
Length = 715
Score = 520 bits (269), Expect = e-152
Identities = 298/311 (95%), Gaps = 9/311 (2%)
Strand = Plus / Plus
Query: 5 gaattcatctttttttttt-ttt-attatatgtaaattcactgtagctgtcttcagacac 62
||||||||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||
Sbjct: 210 gaattcatcttttttttttctttaattatatgtaaatacactgtagctgtcttcagacac 269
Query: 63 tccagaagagggagtcagatctcattatggatggttgtgagccaccatgtggttgcaggg 122
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 270 tccagaagagggagtcagatctcattatggatggttgtgagccaccatgtggttgctggg 329
Query: 123 atttgaacttcggacctttggaagagcagtcgggtgctcttacccactgagccatctcac 182
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 atttgaacttcggacctttggaagagcagtcgggtgctcttacccactgagccatctcac 389
Query: 183 cagctcatctcacgtgaattcatctttaaatgcagaatgtgtaaacccaccttaccatgc 242
|||| | ||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 390 cagc-c------cgtgaattcatctttaaatgcagaatgtgtaaacccagcttaccatgc 442
Query: 243 tagagataacaccccaaaagtttccagtaatatactactcttatctatgttatccagacc 302
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 443 tagagataacaccccaaaagtttccagtaagatactactcttatctatgttatccagacc 502
Query: 303 tggaattttgt 313
|||||||||||
Sbjct: 503 tggaattttgt 513
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 315
Length of database: 715
Length adjustment: 9
Effective length of query: 306
Effective length of database: 706
Effective search space: 216036
Effective search space used: 216036
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no231_l09.g1 MSMg01no231_l09.g1 CHROMAT_FILE:
MSMg01no231_l09.g1 PHD_FILE: MSMg01no231_l09.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:04 2005
(288 letters)
>mm_chr12_85085192_85085879
Length = 688
Score = 528 bits (273), Expect = e-154
Identities = 282/285 (98%)
Strand = Plus / Minus
Query: 1 ttcgtatgtttctctgaaaattgagccttaccacattagccaaatgcacaattctctgtt 60
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 485 ttcgtatgtttctctgaaaattgagccttaccacattagccaaatgcagaattctctgtt 426
Query: 61 actgttaacattacagccacacagttcatggtaagctgttctttgtaaacatttccaaag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 actgttaacattacagccacacagttcatggtaagctgttctttgtaaacatttccaaag 366
Query: 121 atttgacttttaattctgacgccatttcttccttttccagccacctttgggactgtagct 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 365 atttgacttttaattctgacaccatttcttccttttccagccacctttgggactgtagct 306
Query: 181 ttcccgtcctgcaggctccatttaatttctttaattctgggttttaagtgctctcgcctc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ttcccgtcctgcaggctccatttaatttctttaattctgggttttaagtgctctcgcctc 246
Query: 241 tatttaatgcagcaattacatttctcagcatgagcttttcctttt 285
||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 245 tatttaaggcagcaattacatttctcagcatgagcttttcctttt 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 288
Length of database: 688
Length adjustment: 9
Effective length of query: 279
Effective length of database: 679
Effective search space: 189441
Effective search space used: 189441
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
|
