BAC Information

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BAC

Clone NameMSMg01-231L19
Chromosome12 (Build37)
Map Location 28,953,694 - 28,953,943
singlet/doubletsinglet
Overlap genenone
Upstream geneSox11, LOC100043009, LOC669327
Downstream gene1110015M06Rik, Allc, Colec11, Rps7, Rnaseh1, Adi1, Ttc15, Tssc1, 4833405L11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231L19.T7 (MSMg01no231_l19.b1)MSMg01-231L19.TJ (MSMg01no231_l19.g1)
ACCAG398463AG398464
length736737
length of high quality
(start - end)
321 (45 - 365)250 (438 - 687)
definitionCHROMAT_FILE: MSMg01no231_l19.b1 PHD_FILE: MSMg01no231_l19.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:05 2005CHROMAT_FILE: MSMg01no231_l19.g1 PHD_FILE: MSMg01no231_l19.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:05 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCATAGATGGCTAGTGATAGCATGACTGTTTTATTATATTATTTCTGT
TGACCCATGACTGTAGATGTCTTTCCATCTTCTAGTGTCCTCTAAATTTG
TTTCTTCAACCTTTTGAAATTTTCACTGTGAAGGTCTTTAGCCTACTTGG
TTATGATTTTATTCATAGGTAGTTTTTTGAAGCCAATAAGAGTGAGAGTT
TTTTTTTCCCTAAGCTTATTTCTCAGTACGTTTGCTAATGATATATCAAA
AAAGTAACTGATATTTGTATGTTGATTGTTTAAGTCTATTACTTTGCTGA
AAATATCAGTTCTATTTGTTTTCTGCCATCGCTTTTAGGGTAACTTATGT
ACAATAATATCATGTGGGAAAACAAGGATATTTTCGACTATTTGTTTTCT
ACCGGGTCACTAAACAGAAATTAGATATTAAATATGAGAAGAATAAAAGT
GAAGGAGAGATAATTGGTCAGGGGTGTATGCAGTCTTTTGCCTGAAACCT
GATGCCCAGGGCAGGCTCTGTAGTTTATGTTAGACATAGTTTCAAACTAT
GCAAGAGTCAGGTAAGTCTCAGGCTTCTCCCAACATTCATGATGGAATTG
GAGTTTTCCTATGGAAACAAGTGTCAGGACTCATGTCTAGTTAGTGTCCA
CTGAAGCTAGAGGGAAAAAAACCAGGCAGCAATGCN
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAATATCCACACAGAGTCATATAT
AAATGTACAATATAGAAATCATAGTGCCTGCATGAGATACATGTAGACAA
GTTTGGCAGGTGAGACACAGAGCTGTAGTTAGGTGGTGTCCTAGCTCCTT
TGCTCCTGCTGTGAGTTAGGTGGTATAGCTACTCTGTTGATCCTGCCTTA
CTGTCAGAGCAACCACACCAGCCCCACTAACTTTTCCTTGCTTCCTTCCC
CTTCAGACAGTTACTGAGGTGTCATATGATGCCCCTGTGGCCCCATTGGG
AAGAAGCGAGGCTCATTTTTTATGCTCTTGCCCCGCCAAGGACATTCTAT
GCTGCTATTGACACTTTCTGACACCCTGGAGTGCAATTCCTCTCTCATTA
TTCATCTTCATGACTTATTTTCTTATTTACTCTGATGCAGAAACAATGAA
GTTCCCCCTGTGCTTCAGAGGGGCACTCAGCCATGCATGCCAGATCAAAA
GAACACCTCTCTCTATCAGATTTTGCTTTAATTCTGCCACTTAGAATTTT
GAAATAGATGCCTTCTAACCTCCCTCTAGGCTGTTTCTAANAACACCAAG
AATAACAAATGAGTTTCATCTGATTAAATGGCGTGGGTTGGAAGATTCAG
GGCATGCTTTTATGTTCATGCAAATTAAGGTGAGAAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_l19.g1 MSMg01no231_l19.g1 CHROMAT_FILE:
MSMg01no231_l19.g1 PHD_FILE: MSMg01no231_l19.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:05 2005
         (250 letters)



>mm_chr12_28953494_28954143
          Length = 650

 Score =  478 bits (247), Expect = e-139
 Identities = 249/250 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcctctctcattattcatcttcatgacttattttcttatttactctgatgcagaaacaat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 450 tcctctctcattattcatcttcatgacttattttcttatttactctgatgcagaaacaat 391

                                                                       
Query: 61  gaagttccccctgtgcttcagaggggcactcagccatgcatgccagatcaaaagaacacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 390 gaagttccccctgtgcttcagaggggcactcagccatgcatgccagatcaaaagaacacc 331

                                                                       
Query: 121 tctctctatcagattttgctttaattctgccacttagaattttgaaatagatgccttcta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 330 tctctctatcagattttgctttaattctgccacttagaattttgaaatagatgccttcta 271

                                                                       
Query: 181 acctccctctaggctgtttctaanaacaccaagaataacaaatgagtttcatctgattaa 240
           ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 270 acctccctctaggctgtttctaaaaacaccaagaataacaaatgagtttcatctgattaa 211

                     
Query: 241 atggcgtggg 250
           ||||||||||
Sbjct: 210 atggcgtggg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 250
Length of database: 650
Length adjustment: 9
Effective length of query: 241
Effective length of database: 641
Effective search space:   154481
Effective search space used:   154481
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)