BAC Information

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BAC

Clone NameMSMg01-231O08
Chromosome12 (Build37)
Map Location 100,707,535 - 100,853,531
singlet/doubletdoublet
Overlap geneLOC100039892
Upstream geneKcnk10, Spata7, Ptpn21, Zc3h14, Eml5, LOC100039845, Ttc8, EG667779, Ches1
Downstream gene2610021K21Rik, Tdp1, LOC100040041, Kcnk13, Psmc1, BC002230, Calm1, Ttc7b, Rps6ka5
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-231O08.T7 (MSMg01no231_o08.b1)MSMg01-231O08.TJ (MSMg01no231_o08.g1)
ACCAG398575AG398576
length682719
length of high quality
(start - end)
194 (85 - 278)335 (385 - 719)
definitionCHROMAT_FILE: MSMg01no231_o08.b1 PHD_FILE: MSMg01no231_o08.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:16 2005CHROMAT_FILE: MSMg01no231_o08.g1 PHD_FILE: MSMg01no231_o08.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:16 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(100,707,535 - 100,707,728)(100,853,198 - 100,853,531)
sequence
GATCCGCGGAATTCCAGAGTGTCCCGTAAGGAGCTGCCGGGCAGGGGAAA
GAACGATCAAGTTGCCCCGTGGATATAACGCCACAGTGACAAATGAGGAC
TGCCTTCTGTGACAGTCCTTAGCAAGCCAGGAAACAATGGAGAAATTTGA
GAATTTGACATCTAAAAACCAAGACCCAATAATCATTCAAGAGTGGAGCG
AAGGCTTGGCCGAACCGTTCTTTCTATCGGATCATAAACCACACATCACC
TTGTCTTAACTTTACTGTAAGGGGATACTCTAATCACAGTCTGAAAGATA
CGGACTCTAACTTTATTATTTTTTTGCCGCCCCCCCCCCCCTATAAAGGG
ATGTGTGTGGCTAATTCAGAAACACCCCACCCCCTGAAAATGTCTTGCTG
GTGCCTCTGCTCCACGTAATCCATGCAGAGTAGAACAGACACCTCAGGCT
GTCCCCTGACCCCTCCATGAGCACAGTGGCACACTGCCCCCCCACATTCA
TTCCCACCACCGGTCCCATGCACACACCCCCACACCCAACGCTGTGCCAG
CCCACAGCGACGTCTCCCCCCCACACCACCCATTCACAGGAACACCTTTT
CGAACCATTTACACACTGAGTCCTGCTGCAACTTAACTGCGACACCACCA
CAACTCCCATCACCCCCTTGTTATCCGTAGGG
CGATGACXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXCAGGACAGCTGGGCTATAAAGTGA
GACTCTGTCTATAGAAATTCCAAACAAACAAAACAGAAAGCCAAGACAAC
AATAAAGACAAGGGCTGGGGTATAGCTCAGCTAGCACAGTGCTTTCCTGG
TGTGCATGAACTCCCAGGGTCCAACGCCACATAAAGCCAGGAGGAGTAAG
GCTGCATGTCTGATTCTAGGATGACTGTAATCCCAGTAGTCAGAAGACGG
TGGATGGAAAATCAGAAGTTCAAGGTCATCTTTGGCTACATGGTGTATTG
GGAGCTAGCCTGTTTTATCTGTCCCCCCCCCCGCCGGTTGGGGGGATGAC
CCACACAGCACAAGGATACCTATCCAAAAGAAAGAGAATGTCATCAAAAG
AGAGGGGAGACTGTGACACAGGCAAGTTTCTCTTTGTGCTTTCTTTCAGA
CACTCTTAGCTGACACCCCGACTCTCAGACGTCTCCCCCTAATTCCTGCA
GTACCTTCGGCTGGTCAGCTAATCCTCACAGTCGGGTCTTTGGATAAGCG
ATGTCCAAGGTGGCTTCTTCACTCCAACATGCCCCCCATATAACCTCTAA
GAACACCTGAGCAAAGCAGTATCTCAAAGATGCCATCACTGAAATCAAAA
CAGAGCAGACAGGTTTGGA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no231_o08.b1 MSMg01no231_o08.b1 CHROMAT_FILE:
MSMg01no231_o08.b1 PHD_FILE: MSMg01no231_o08.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:16 2005
         (194 letters)



>mm_chr12_100707335_100707928
          Length = 594

 Score =  344 bits (178), Expect = 2e-99
 Identities = 190/194 (97%)
 Strand = Plus / Plus

                                                                       
Query: 1   agtgacaaatgaggactgccttctgtgacagtccttagcaagccaggaaacaatggagaa 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 201 agtgacaaatgaggactgccttctgtgacagtccttagcaagccaggaaacactggagaa 260

                                                                       
Query: 61  atttgagaatttgacatctaaaaaccaagacccaataatcattcaagagtggagcgaagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atttgagaatttgacatctaaaaaccaagacccaataatcattcaagagtggagcgaagg 320

                                                                       
Query: 121 cttggccgaaccgttctttctatcggatcataaaccacacatcaccttgtcttaacttta 180
           ||||||||||| |||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct: 321 cttggccgaactgttctttctatcggattataaaccacacatcaccctgtcttaacttta 380

                         
Query: 181 ctgtaaggggatac 194
           ||||||||||||||
Sbjct: 381 ctgtaaggggatac 394


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 8
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 194
Length of database: 594
Length adjustment: 8
Effective length of query: 186
Effective length of database: 586
Effective search space:   108996
Effective search space used:   108996
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no231_o08.g1 MSMg01no231_o08.g1 CHROMAT_FILE:
MSMg01no231_o08.g1 PHD_FILE: MSMg01no231_o08.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:16 2005
         (335 letters)



>mm_chr12_100852997_100853731
          Length = 735

 Score =  630 bits (326), Expect = 0.0
 Identities = 332/334 (99%)
 Strand = Plus / Minus

                                                                       
Query: 2   ggttggggggatgacccacacagcacaaggatacctatccaaaagaaagagaatgtcatc 61
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 ggttggggggatgacccacacagcacaaggatacctatccaaaagaaagagaatgtcatc 476

                                                                       
Query: 62  aaaagagaggggagactgtgacacaggcaagtttctctttgtgctttctttcagacactc 121
           ||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||
Sbjct: 475 aaaagagaggggagactgtgacacatgcaagtttctctttgtgctttctttcggacactc 416

                                                                       
Query: 122 ttagctgacaccccgactctcagacgtctccccctaattcctgcagtaccttcggctggt 181
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 415 ttagctgacaccccgactctcagacgtctccccctaattcctgcagtaccttcggctggt 356

                                                                       
Query: 182 cagctaatcctcacagtcgggtctttggataagcgatgtccaaggtggcttcttcactcc 241
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 355 cagctaatcctcacagtcgggtctttggataagcgatgtccaaggtggcttcttcactcc 296

                                                                       
Query: 242 aacatgccccccatataacctctaagaacacctgagcaaagcagtatctcaaagatgcca 301
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 295 aacatgccccccatataacctctaagaacacctgagcaaagcagtatctcaaagatgcca 236

                                             
Query: 302 tcactgaaatcaaaacagagcagacaggtttgga 335
           ||||||||||||||||||||||||||||||||||
Sbjct: 235 tcactgaaatcaaaacagagcagacaggtttgga 202


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 335
Length of database: 735
Length adjustment: 9
Effective length of query: 326
Effective length of database: 726
Effective search space:   236676
Effective search space used:   236676
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)