BAC Information

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BAC

Clone NameMSMg01-232B24
Chromosome12 (Build37)
Map Location 120,621,747 - 120,664,920
singlet/doubletdoublet
Overlap genenone
Upstream geneLOC100042993, LOC668611, EG668615, LOC620665, Sp8, Abcb5, Itgb8, EG627557, LOC100043011
Downstream gene4732474O15Rik, LOC668632, LOC668633, Gm528, LOC100043017
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232B24.T7 (MSMg01no232_b24.b1)MSMg01-232B24.TJ (MSMg01no232_b24.g1)
ACCAG398733AG398734
length734735
length of high quality
(start - end)		664 (71 - 734)610 (126 - 735)
definitionCHROMAT_FILE: MSMg01no232_b24.b1 PHD_FILE: MSMg01no232_b24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:32 2005CHROMAT_FILE: MSMg01no232_b24.g1 PHD_FILE: MSMg01no232_b24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:48:33 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(120,621,747 - 120,622,410)(120,664,313 - 120,664,920)
sequence
TATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCATGAGTGGCTTCTAGAAGAGGAAAAGGGAAGAAGGACCCTTGCAATA
TCCATAAATGGATGTGATTCTGCACACACTTTGGCTTTGACTCAGTGAGA
CATGTGCCAGTCTCTTTAAATCCAGAACACAAAGACATTTTAAAATTACA
TTTAGTATGGTTGGGGGCACATGCATGTGGAGGTCAGGGGACAATTTGCA
AGGGATGTTCCTGTCATACAATATGGTACTATTAATTGAACTCAGGTCCT
CTGGCTTGGTGCTAGATGACTTTACTTGTGAGCCCTCTCGCTGGTCCAGA
AATTAAAATTTGTAGTTTAAGCCATTAATTTTATAGCAATTTTATATTAT
TAATTAAAAATAAATATGCTATCAATGAGTATGTTAGCACTAGGCAAAGG
TACCTTGATAGGTTAAGCATTCTGGATAGAAATCCTCCTTATAGAGTATT
GAATGGGTGGTGTATGGTACCCATAGTCTTCTCTTCCACAGAGCTTGGAG
ATTTTTGACCCATATAGATAGATATACTGATATGTATCGGTAGAGTTTTA
CCTTGTATCCTCAAATGATATTGTAGAGTTCATTGTGCCATAATACTAAT
TAGTAACATGAAATATATGAGATAGCACTCTCAGGGAATGAGATCTTTTT
CCTTCATGTCTTAAAAAATGTTTTATGTCTTGCG

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCATAGCTCAGCACCAAAGTAAATAGATG
ATGAAGACTGAGATTAGCTGCTCCTATGAATGTGTATTTACCCACCATTA
CTCATTTCAAAAGCCTCTGACACACAGACAATCTGATTCATCCTGGCTAC
ATGCCATCTTAGCCCATGCCATCATTCAGGTCATACCAGAGACACTGCTA
TTAGCTTACTTTAGGGCTGACAAGGACAGCTGAGATTAGCACTTTTGGTT
TTGTTGAAGAAATTAGCTCTGAATGTGGGGCTAAATGAACTCTATTATCT
TTTAAAGAGTAATTGTGTCACCTGAACATGTGTAATATGGATAATTGCTT
CCCTTTTAGTACACAGGTACCAATGTAACTTTTAGAAACAAACAGACTCA
AGGAATTGGGTGAGTGAACAGATGATTACATGAATGAAAGAGCAGCATAG
ACTGAGCACTGCAGTGTGACTTCTGTGAGCAGGGACTGCCTGAGTCAGCT
TTGGATCCCAACACTTGCCAGGACTCATGAAGTAAGCTCTTAGCAGTATT
GATGGAATGGTTCAAAGTAAATAATGCACTCTGTCAATGTGTGTCAAAAG
ATATAAGACTATTAAACGGGACTTGCCAGAGAACTAGATAGCTACTTATC
TATAATTACCGTGGTGAGACTCCCCCTATCTAANA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_b24.b1 MSMg01no232_b24.b1 CHROMAT_FILE:
MSMg01no232_b24.b1 PHD_FILE: MSMg01no232_b24.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:32 2005
         (664 letters)



>mm_chr12_120621547_120622610
          Length = 1064

 Score = 1230 bits (636), Expect = 0.0
 Identities = 657/664 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   gaggaaaagggaagaaggacccttgcaatatccataaatggatgtgattctgcacacact 60
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 201 gaggaaaagggaagaaggacccttgcaatatccataaatggatgtgattctgcagacact 260

                                                                       
Query: 61  ttggctttgactcagtgagacatgtgccagtctctttaaatccagaacacaaagacattt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ttggctttgactcagtgagacatgtgccagtctctttaaatccagaacacaaagacattt 320

                                                                       
Query: 121 taaaattacatttagtatggttgggggcacatgcatgtggaggtcaggggacaatttgca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taaaattacatttagtatggttgggggcacatgcatgtggaggtcaggggacaatttgca 380

                                                                       
Query: 181 agggatgttcctgtcatacaatatggtactattaattgaactcaggtcctctggcttggt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agggatgttcctgtcatacaatatggtactattaattgaactcaggtcctctggcttggt 440

                                                                       
Query: 241 gctagatgactttacttgtgagccctctcgctggtccagaaattaaaatttgtagtttaa 300
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 441 gctagatgactttacttgtgagccctctcactggtccagaaattaaaatttgtagtttaa 500

                                                                       
Query: 301 gccattaattttatagcaattttatattattaattaaaaataaatatgctatcaatgagt 360
           |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 gccaataattttatagcaattttatattattaattaaaaataaatatgctatcaatgagt 560

                                                                       
Query: 361 atgttagcactaggcaaaggtaccttgataggttaagcattctggatagaaatcctcctt 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 atgttagcactaggcaaaggtaccttgataggttaagcattctggatagaaatcctcctt 620

                                                                       
Query: 421 atagagtattgaatgggtggtgtatggtacccatagtcttctcttccacagagcttggag 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 atagagtattgaatgggtggtgtatggtacccatagtcttctcttccacagagcttggag 680

                                                                       
Query: 481 atttttgacccatatagatagatatactgatatgtatcggtagagttttaccttgtatcc 540
           |||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||
Sbjct: 681 atttttgacccatatagatagatatactgatatgtatctgtagagctttaccttgtatcc 740

                                                                       
Query: 541 tcaaatgatattgtagagttcattgtgccataatactaattagtaacatgaaatatatga 600
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 741 tcaaatgatattgtagagttcattgtgccataatactaattagtaacatgaaatatatga 800

                                                                       
Query: 601 gatagcactctcagggaatgagatctttttccttcatgtcttaaaaaatgttttatgtct 660
           |||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 801 gatagcactctcggggaatgagatctttttccttcatgtcttaaaaaatgttttatgcct 860

               
Query: 661 tgcg 664
           ||||
Sbjct: 861 tgcg 864


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 664
Length of database: 1064
Length adjustment: 10
Effective length of query: 654
Effective length of database: 1054
Effective search space:   689316
Effective search space used:   689316
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no232_b24.g1 MSMg01no232_b24.g1 CHROMAT_FILE:
MSMg01no232_b24.g1 PHD_FILE: MSMg01no232_b24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:48:33 2005
         (610 letters)



>mm_chr12_120664113_120665122
          Length = 1010

 Score = 1145 bits (592), Expect = 0.0
 Identities = 604/608 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   atgaatgtgtatttacccaccattactcatttcaaaagcctctgacacacagacaatctg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 808 atgaatgtgtatttacccaccattactcatttcaaaagcctctgacacacagacaatctg 749

                                                                       
Query: 61  attcatcctggctacatgccatcttagcccatgccatcattcaggtcataccagagacac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 748 attcatcctggctacatgccatcttagcccatgccatcattcaggtcataccagagacac 689

                                                                       
Query: 121 tgctattagcttactttagggctgacaaggacagctgagattagcacttttggttttgtt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 688 tgctattagcttactttagggctgacaaggacagctgagattagcacttttggttttgtt 629

                                                                       
Query: 181 gaagaaattagctctgaatgtggggctaaatgaactctattatcttttaaagagtaattg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 628 gaagaaattagctctgaatgtggggctaaatgaactctattatcttttaaagagtaattg 569

                                                                       
Query: 241 tgtcacctgaacatgtgtaatatggataattgcttcccttttagtacacaggtaccaatg 300
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 568 tgtcacctgaacatgtgtaatatggataattgcttctcttttagtacacaggtaccaatg 509

                                                                       
Query: 301 taacttttagaaacaaacagactcaaggaattgggtgagtgaacagatgattacatgaat 360
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 508 taacttttagaaataaacagactcaaggaattgggtgagtgaacagatgattacatgaat 449

                                                                       
Query: 361 gaaagagcagcatagactgagcactgcagtgtgacttctgtgagcagggactgcctgagt 420
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 448 gaaagagcagcatagactgagcactgcagtgtgacttctgtgagcagggactgcctaagt 389

                                                                       
Query: 421 cagctttggatcccaacacttgccaggactcatgaagtaagctcttagcagtattgatgg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 388 cagctttggatcccaacacttgccaggactcatgaagtaagctcttagcagtattgatgg 329

                                                                       
Query: 481 aatggttcaaagtaaataatgcactctgtcaatgtgtgtcaaaagatataagactattaa 540
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 328 aatggttcaaagtaaataatgcactctgtcaatgtgtgtcaaaagatataagactattaa 269

                                                                       
Query: 541 acgggacttgccagagaactagatagctacttatctataattaccgtggtgagactcccc 600
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 268 acgggacttgccagagaactagatagctacttatctataattaccgtggtgagacttccc 209

                   
Query: 601 ctatctaa 608
           ||||||||
Sbjct: 208 ctatctaa 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 610
Length of database: 1010
Length adjustment: 10
Effective length of query: 600
Effective length of database: 1000
Effective search space:   600000
Effective search space used:   600000
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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