BAC Information

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BAC

Clone NameMSMg01-232K04
Chromosome12 (Build37)
Map Location 77,218,861 - 77,381,450
singlet/doubletdoublet
Overlap geneEsr2, LOC665957, Tex21, Mthfd1
Upstream geneKcnh5, Rhoj, Gphb5, Ppp2r5e, Wdr89, LOC665931, Sgpp1, Syne2
Downstream geneAkap5, Zbtb25, Zbtb1, Hspa2, Gm70, LOC100041694, Plekhg3, Spnb1, Churc1, Gpx2, Rab15, Fntb, Max, LOC100041765, LOC100041772, Fut8
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-232K04.T7 (MSMg01no232_k04.b1)MSMg01-232K04.TJ (MSMg01no232_k04.g1)
ACCAG399080AG399081
length734735
length of high quality
(start - end)
313 (46 - 358)360 (376 - 735)
definitionCHROMAT_FILE: MSMg01no232_k04.b1 PHD_FILE: MSMg01no232_k04.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:10 2005CHROMAT_FILE: MSMg01no232_k04.g1 PHD_FILE: MSMg01no232_k04.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:49:10 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(77,381,141 - 77,381,450)(77,218,861 - 77,219,220)
sequence
TCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCTGAATCTAAAGGCAGCTGCACTATGAATCCGTGCACAGAGGCA
TCCTCATTCAGGGAGATGACATATTTTAATACCTAAAAGTAGTGCCACAG
TTGATTTGTACTAATTAATCACAGACACTGAAAGGGGGAAGGGAAGGCTG
TAAAGAAATATTTTCTGTCTGCAAAGTGTATCTCAGCCCCTGAAGTCCCA
CCAAAGCAAGCAGGCAGGGAGACACCTCGCCATGTGCATCCACACGCTCA
CCTCGGACTCTGTGGATGTTCTTGGTAATTTAATGTGAGTGGCTTTGATC
CCAATCTGTATATAATAACCACCCCCACCAGGGAAATGGTATGAGAACCT
GAGACCTGGGCCTGCGCGATGGTTTGTATGTGCTTGGCCCAAGGAGTGGC
ACTATTTGAAGGTGTGGCCTTGTTGGAGTGGGTGTGTCACTGTGGGTGTG
GGCTTTAAGACCCTCATCCTAGCTGCCTGGAAGTCAGTATTCTGCTAGCA
GCTTTCAGATGAAGATGTAGAACTCTCAGCTCCTCCTATACCATGACTAT
CGGGATGCTGCCATGCTCCCTCCTCAATGATAATGGACTGAACCTCTGAA
CCTGTAAGCCAGCCCCAGTTAAAAGTTGTTCTTATAAGAGTTGCCTTGGT
CATGGTGTCTGTTCACAGCAGTAAAACCTTAACT
GATTGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXTTATGTCAGAAATTTCTAAGCTGTTT
GTGGCTGTTCCCAGGGGTGTCTGGGGTGTCAGGCATGCGGTATTTCATAG
GTAGACCCCACTTAAGCCTCAGTAACCCTGCTTGATAAATTCTGTAGCTT
AGAAAAGATTTGGGAGAGGGGGGAGCTGGGGAATGTAGCACAATGGTAGG
AAGCAAAAGAGATAAAATGTTTGGAATTCTTTTTTGCAGTGCTTGGGATA
ATGCCCAGCCTTGTGCATGCAAGGTTAAGACCTCTTAGCCTGAAAGCTCC
ACTCAGTTTTATCCCCTTGCCACCCCCAGCCTGGAACTGCCAGCATTTAT
TCTGTGTGACCTTGACTAAGTCTGCTTGGCATTCTAGCTTCCACATCCTG
ACAATTAAAATAGAGTCACAGTAATGGATTATGAAGACTAAATGTGAAAA
CTGTGTCTGGCTTGCAGTGTTCCACAAATACCATTTCACATACCAGATGG
TATATTTTTGTTACTTATATAACGTTTATAGTATCTTTTTTAAAAAGCAG
CTTAAAGACATGTATCAAGTCTTAATAAACAAAACTACTTTGTTTCAAAA
TAGAGCTAGAAATCCAGGACCCACCTTGAGTTTTGAGAAGTTATCAACAC
ATGCAAGCAGATGCAAATAGGAACTAACCCGCCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no232_k04.b1 MSMg01no232_k04.b1 CHROMAT_FILE:
MSMg01no232_k04.b1 PHD_FILE: MSMg01no232_k04.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:10 2005
         (313 letters)



>mm_chr12_77380938_77381650
          Length = 713

 Score =  561 bits (290), Expect = e-164
 Identities = 305/310 (98%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattctctgaatctaaaggcagctgcactatgaatccgtgcacagaggcatcctcatt 63
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 513 ggaattctctgaatctaaaggcagctgcactatgaatccgtgcacagaggcatcctcgtt 454

                                                                       
Query: 64  cagggagatgacatattttaatacctaaaagtagtgccacagttgatttgtactaattaa 123
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 453 cagggagatgacatattttaacacctaaaagtagtgccacagttgatttgtactaattaa 394

                                                                       
Query: 124 tcacagacactgaaagggggaagggaaggctgtaaagaaatattttctgtctgcaaagtg 183
           ||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||
Sbjct: 393 tcacagacactgaaaggaggaaggaaaggctgtaaagaaatattttctgtctgcaaagtg 334

                                                                       
Query: 184 tatctcagcccctgaagtcccaccaaagcaagcaggcagggagacacctcgccatgtgca 243
           ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 333 tatctcagcccctgaagtcccaccaaagcaagcagacagggagacacctcgccatgtgca 274

                                                                       
Query: 244 tccacacgctcacctcggactctgtggatgttcttggtaatttaatgtgagtggctttga 303
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 tccacacgctcacctcggactctgtggatgttcttggtaatttaatgtgagtggctttga 214

                     
Query: 304 tcccaatctg 313
           ||||||||||
Sbjct: 213 tcccaatctg 204


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space:   214016
Effective search space used:   214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
Query= MSMg01no232_k04.g1 MSMg01no232_k04.g1 CHROMAT_FILE:
MSMg01no232_k04.g1 PHD_FILE: MSMg01no232_k04.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:10 2005
         (360 letters)



>mm_chr12_77218661_77219420
          Length = 760

 Score =  658 bits (340), Expect = 0.0
 Identities = 355/360 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ccagcctggaactgccagcatttattctgtgtgaccttgactaagtctgcttggcattct 60
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 201 ccagcctggaactgccagcatttattctgtgtgaccttgagtaagtctgcttggcattct 260

                                                                       
Query: 61  agcttccacatcctgacaattaaaatagagtcacagtaatggattatgaagactaaatgt 120
           |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 261 agcttccacatcctgacaattaaaatagagtcacagtaatggattatgaagattaaatgt 320

                                                                       
Query: 121 gaaaactgtgtctggcttgcagtgttccacaaataccatttcacataccagatggtatat 180
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaaaactgtgtctggctcgcagtgttccacaaataccatttcacataccagatggtatat 380

                                                                       
Query: 181 ttttgttacttatataacgtttatagtatcttttttaaaaagcagcttaaagacatgtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ttttgttacttatataacgtttatagtatcttttttaaaaagcagcttaaagacatgtat 440

                                                                       
Query: 241 caagtcttaataaacaaaactactttgtttcaaaatagagctagaaatccaggacccacc 300
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 caagtcttattaaacaaaactactttgtttcaaaatagagctagaaatccaggacccacc 500

                                                                       
Query: 301 ttgagttttgagaagttatcaacacatgcaagcagatgcaaataggaactaacccgcctt 360
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 501 ttgagttttgagaagttatcaacacatgcaagcagatgcaaataggaactaacctgcctt 560


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)