Query= MSMg01no233_a02.b1 MSMg01no233_a02.b1 CHROMAT_FILE:
MSMg01no233_a02.b1 PHD_FILE: MSMg01no233_a02.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:38 2005
(501 letters)
>mm_chr12_61274127_61275027
Length = 901
Score = 911 bits (471), Expect = 0.0
Identities = 488/497 (98%), Gaps = 6/497 (1%)
Strand = Plus / Plus
Query: 5 gaattcaccagctggttttgtagtggggtctctactgtggttgcagccaggaattggcta 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcaccagctggttttgtagtggggtctctactgtggttgcagccaggaattggcta 264
Query: 65 tggttgagttcctgacagatctgactacactgattttcacaatggctcacacacatggct 124
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tggttgagttcatgacagatctgactacactgattttcacaatggctcacacacatggct 324
Query: 125 gacatctgaagctggctatttcctgagaagtagactttactgtaacctatgcatggcttc 184
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 325 gacatctgaagctggctatttcctgagaagtagactttactgtaacctatgcatggattc 384
Query: 185 cttatatagtcaggtcttcttggtactgcagctgattttcaaaatcaaaatttgaggtgt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 cttatatagtcaggtcttcttggtactgcagctgattttcaaaatcaaaatttgaggtgt 444
Query: 245 atgttacagaaagaaagatgtagaagcttctagttaagttggggaagttctgctataaat 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 atgttacagaaagaaagatgtagaagcttctagttaagttggggaagttctgctataaat 504
Query: 305 ggacataacattcttttaaataaaattctgtagttattcaaggaagtcttaccaatattt 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ggacataacattcttttaaataaaattctgtagttattcaaggaagtcttaccaatattt 564
Query: 365 aatgctatagagcaatgattcatgcctttcataaaataccattgcagaagagcctgtggc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 aatgctatagagcaatgattcatgcctttcataaaataccattgcagaagagcctgtggc 624
Query: 425 atgaggacagttgtttaatgggtttgttatttcttttgttgttgttgttgttgttgttgt 484
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 atgaggacagttgtttaatgggtttgttatttcttttgttgttgttgttgttgttgtt-- 682
Query: 485 tgttctgcgaatttttt 501
||| |||||||||
Sbjct: 683 ----ctgggaatttttt 695
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 501
Length of database: 901
Length adjustment: 10
Effective length of query: 491
Effective length of database: 891
Effective search space: 437481
Effective search space used: 437481
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no233_a02.g1 MSMg01no233_a02.g1 CHROMAT_FILE:
MSMg01no233_a02.g1 PHD_FILE: MSMg01no233_a02.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:49:38 2005
(552 letters)
>mm_chr12_61420795_61421746
Length = 952
Score = 793 bits (410), Expect = 0.0
Identities = 430/444 (96%), Gaps = 14/444 (3%)
Strand = Plus / Minus
Query: 113 gtctctcaatatgaagtattctgtgtgatatatacacatgcacatatactcagacaatta 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 952 gtctctcaatatgaagtattctgtgtgatatatacacatgcacatatactcagacaatta 893
Query: 173 ctttgtctactaagtttaattttttcctatattttaaaaaaaattactattaattactat 232
||||||||||||||||||||||||||||||| |||||||||| |||||||||
Sbjct: 892 ctttgtctactaagtttaattttttcctata-tttaaaaaaa---------aattactat 843
Query: 233 taatacaagctgaattttgcaaaatacattctctacaactaatgatatgttttttgg--- 289
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 842 taatacaagctgaattttgcaaaatacattctctacaactaatgatatgttttttggtgt 783
Query: 290 -tgtttgtttgtttgtttgtttgtttgtttttggatgacttacaggacagagcaaatttt 348
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 782 ttgtttgtttgtttgtttgtttgtttgtttttggatgacttacaggacagagcaaatttt 723
Query: 349 ataaaacatctttgtaaaatcactgtgaacagaggcattgttagaatatgatccaacctc 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 722 ataaaacatctttgtaaaatcactgtgaacagaggcattgttagaatatgatccaacctc 663
Query: 409 tttgaggcatctttgaaactccctgaaaatgtattgaatgttttaagaattacacttctt 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 tttgaggcatctttgaaactccctgaaaatgtattgaatgttttaagaattacacttctt 603
Query: 469 tctttttaatcctacgggttccctctgttgtctgtgattgatttgattccagaagaaatg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tctttttaatcctacgggttccctctgttgtctgtgattgatttgattccagaagaaatg 543
Query: 529 ttttgcagacgcacagatttcggt 552
||||||||||||||||||||||||
Sbjct: 542 ttttgcagacgcacagatttcggt 519
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 552
Length of database: 952
Length adjustment: 10
Effective length of query: 542
Effective length of database: 942
Effective search space: 510564
Effective search space used: 510564
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
