BAC Information

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BAC

Clone NameMSMg01-233N06
Chromosome12 (Build37)
Map Location 116,759,799 - 116,760,475
singlet/doubletsinglet
Overlap geneIgh
Upstream geneEG380809, Ighv1-6, EG668474, Ighv10-4, Ighv1-8, Ighv15-2, Ighv1-9, Ighv1-10, Ighv1-11, EG629860, Ighv1-13, Ighv1-14, Ighv1-15, EG629866, Ighv1-17-1, Ighv1-17, Ighv1-18, EG668493, Ighv1-19, EG668497, Ighv1-21-1, Ighv1-21, Ighv1-22, Ighv1-23, Ighv1-24, Ighv1-25, Ighv1-26, Ighv1-27, Ighv1-28, Ighv1-29, Ighv1-30, Ighv1-31, Ighv1-32, Ighv1-33, Ighv1-34, EG668515, Ighv1-36, Ighv1-37, Ighv1-38, Ighv1-39, Ighv1-40, Ighv1-41, EG629906, EG629908, Ighv1-44, Ighv1-45, Ighv1-46, Ighv1-47, Ighv8-3, EG629919, Ighv1-48, Ighv1-49, EG640506, Ighv1-50, Ighv1-51, Ighv1-52, Ighv1-53, EG629930, EG668534, EG211331, Ighv1-55, EG634662, Ighv1-56, EG629936, Ighv8-7, Ighv1-57, Ighv8-8, Ighv1-58, EG432708, Ighv1-60, Ighv1-61, Ighv1-62, EG668544, EG238448, EG668549, EG432709, EG668552, Ighv1-63, Ighv1-64, Ighv8-10
Downstream geneIghv1-65, EG668554, EG636462, LOC217924, Ighv1-66, EG435328, Ighv1-68, LOC435329, EG668563, Ighv1-69, Ighv8-12, LOC619863, EG638634, EG619886, Ighv1-72, EG668575, EG668577, EG668582, Ighv1-75, Ighv1-77, Ighv1-78, GA_x5J8B7W27DS-1519-2216, Ighv1-79, LOC668586, Ighv1-80, Ighv1-81, Olfr241-ps1, Ighv1-83, EG434609, LOC668595, EG668597, EG668599, Zfp386, Vipr2, LOC676058, Wdr60, LOC100042963, D12Ertd551e, D430020J02Rik, Ncapg2, Rnu7-ps1, Ptprn2, LOC627375
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233N06.T7 (MSMg01no233_n06.b1)MSMg01-233N06.TJ (MSMg01no233_n06.g1)
ACCAG399905AG399906
length725745
length of high quality
(start - end)		681 (45 - 725)292 (74 - 365)
definitionCHROMAT_FILE: MSMg01no233_n06.b1 PHD_FILE: MSMg01no233_n06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:37 2005CHROMAT_FILE: MSMg01no233_n06.g1 PHD_FILE: MSMg01no233_n06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:37 2005
singlet/doubletsinglet---
BLAST hitpluralno hit data
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGA
ATTCCAAGCCCATGGCCAGCTCAAGGACTTTCTAGGACGTTGGAACACTG
GTGAAGGCTTAGCTATCTCAGACTTCAATCTTAAAAGGCACTTATAATAA
GATAATACTAAAAAAGAGCATGTGGATCCATAAATCAGACTAACTCGGGA
ATAGAATGTGTATATGTGTTAAAGAGAACACCAGACTCCAGGAGGAAGTT
TCCATGAAACTCTCTGCCTCGTGAGTGGCTTCCAGGTCTCTAGGCCTGTC
AAGCTGACTCGACTGAAGTGTGTGGCACCTTAAGAAATGTTAAATCACAA
TTATTCCTCTTTGTTCTTATCAGTATTGATGTTTCAGAAGTTAGAGATAA
TAAGATTTCTCTAACTTTGATCAACTTTATGCAGTGGTTTGTTGGAATGA
ACATGATTGAATATATGGAAAACAAGCTTGAGTAGATGACTGATTTCATT
AAAGAAGTCTATGCCAAAATAAATCAAGTTCCTTTCATGAATAAAACATC
TTCATATTTTCAGATGTTTAAAAGATAAAAATATCAAGTTATGTCCATAC
CATAAAATAAGATCTTAGTACAAAGTTTTATTAACACAAGAAAGAGAAAC
GAATCCCAGAATGCTGACTGACATCAGAGGGCCTGAACCCATAGCATAAG
ATGTGCAATAAGACCTGCACTGACA

ATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACAGATTGGGAAAAGATTTTTACTCA
ACCTGCAACTTATAAGGGGCTAATAACCAATATGTACAAAGAACTCAAGA
AGTTAGGCTCCAGAGAACCAAATAACCCTATTAAAAATGTTGTAAAGAAC
TAAACATAGAATTCTCAAGTGAGGAATATCAATTGGACAAAATGAAATTA
AAGAAATGTTCAACATCTTTATTCATCAGGGAATTGCAAATAGAAACAAC
CCTGAGATTCCACCTCACACCCGTCAGAATTGCTAAGATTAAATACTCAA
GTGATAGTAGATTTTGATGAGCACGCCCCCCCCGAGGAAAACTCCTCCAA
TGCCAGTGGGATTACAAGCTGGTATCATAACAATAGAAATCAGTCTGACA
GTTCCTCAGAAAACTTGACATAGTAACACCTGAGGACCTAGCAATACAAT
TTTTGGGCATATGCCAAGAAGATGCTCCAATATGTAATAAGGGTTCATGC
TCCACTATGTTCATAGAAGCCATATTTATAATGACTTGGATCTAGAAAGA
ACCTAGATGTTCTTAAACAAAGGAATGGATTCAGAATATATGGGACATTT
ACCGAATGTATTACTATTTTGCTATTAACAATGATGAATTCATGAAATTC
TCATGTAAATGGATAGAATTAGAATATATCATCCTGAGTGAGGTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_n06.b1 MSMg01no233_n06.b1 CHROMAT_FILE:
MSMg01no233_n06.b1 PHD_FILE: MSMg01no233_n06.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:37 2005
         (681 letters)



>mm_chr12_116759595_116760675
          Length = 1081

 Score = 1294 bits (669), Expect = 0.0
 Identities = 675/677 (99%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattccaagcccatggccagctcaaggactttctaggacgttggaacactggtgaaggc 64
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattccaagcccatggtcagctcaaggactttctaggacgttggaacactggtgaaggc 264

                                                                       
Query: 65  ttagctatctcagacttcaatcttaaaaggcacttataataagataatactaaaaaagag 124
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 ttagctatctcagaattcaatcttaaaaggcacttataataagataatactaaaaaagag 324

                                                                       
Query: 125 catgtggatccataaatcagactaactcgggaatagaatgtgtatatgtgttaaagagaa 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 catgtggatccataaatcagactaactcgggaatagaatgtgtatatgtgttaaagagaa 384

                                                                       
Query: 185 caccagactccaggaggaagtttccatgaaactctctgcctcgtgagtggcttccaggtc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 caccagactccaggaggaagtttccatgaaactctctgcctcgtgagtggcttccaggtc 444

                                                                       
Query: 245 tctaggcctgtcaagctgactcgactgaagtgtgtggcaccttaagaaatgttaaatcac 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 tctaggcctgtcaagctgactcgactgaagtgtgtggcaccttaagaaatgttaaatcac 504

                                                                       
Query: 305 aattattcctctttgttcttatcagtattgatgtttcagaagttagagataataagattt 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 aattattcctctttgttcttatcagtattgatgtttcagaagttagagataataagattt 564

                                                                       
Query: 365 ctctaactttgatcaactttatgcagtggtttgttggaatgaacatgattgaatatatgg 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 ctctaactttgatcaactttatgcagtggtttgttggaatgaacatgattgaatatatgg 624

                                                                       
Query: 425 aaaacaagcttgagtagatgactgatttcattaaagaagtctatgccaaaataaatcaag 484
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 aaaacaagcttgagtagatgactgatttcattaaagaagtctatgccaaaataaatcaag 684

                                                                       
Query: 485 ttcctttcatgaataaaacatcttcatattttcagatgtttaaaagataaaaatatcaag 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 685 ttcctttcatgaataaaacatcttcatattttcagatgtttaaaagataaaaatatcaag 744

                                                                       
Query: 545 ttatgtccataccataaaataagatcttagtacaaagttttattaacacaagaaagagaa 604
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 745 ttatgtccataccataaaataagatcttagtacaaagttttattaacacaagaaagagaa 804

                                                                       
Query: 605 acgaatcccagaatgctgactgacatcagagggcctgaacccatagcataagatgtgcaa 664
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 805 acgaatcccagaatgctgactgacatcagagggcctgaacccatagcataagatgtgcaa 864

                            
Query: 665 taagacctgcactgaca 681
           |||||||||||||||||
Sbjct: 865 taagacctgcactgaca 881


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 32
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 681
Length of database: 1081
Length adjustment: 10
Effective length of query: 671
Effective length of database: 1071
Effective search space:   718641
Effective search space used:   718641
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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