BAC Information

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BAC

Clone NameMSMg01-233P13
Chromosome12 (Build37)
Map Location 54,589,154 - 54,754,672
singlet/doubletdoublet
Overlap geneNpas3
Upstream geneArhgap5, Akap6
Downstream geneEgln3, EG665239, EG665251, LOC665256, LOC621363, 1110002B05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-233P13.T7 (MSMg01no233_p13.b1)MSMg01-233P13.TJ (MSMg01no233_p13.g1)
ACCAG400005AG400006
length720721
length of high quality
(start - end)		318 (46 - 363)296 (76 - 371)
definitionCHROMAT_FILE: MSMg01no233_p13.b1 PHD_FILE: MSMg01no233_p13.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:48 2005CHROMAT_FILE: MSMg01no233_p13.g1 PHD_FILE: MSMg01no233_p13.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:50:48 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(54,754,359 - 54,754,672)(54,589,154 - 54,589,449)
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCATGAATACCAAAAACCATGGGCTCTCATTGGCAGAACATGCCCTT
TCCACACTACCCTCCCCATTACAATAGTCTAGAAGAATCCAAGATACAAG
TCCAAGGATCATGGAAATACAATCTGAAAATGCAGATACTGATTGAAATA
AGAATAATATAATATTCTGGTCTGAATTAGTGCTATGTCTTAGAGATATA
AGGTCAATGGAGGTGTAAGGAGAAAAATAAGACCAGAATTTAAAAAAATG
AAATAGATTTTTAAGCAGTTGTTTTCAACACAAGAAAAAGCATACAGAAA
CCAATGTACCTCTTATTCATGTTTTCACATTAGTCATGGATTTTGTGTGT
TTGGGGGAGGGGCATTATTTTGTGATTTTGAAACGGCCCTAAGCATCCCT
GAAAATCAGCTAACCCCCAAACGGAGTGGCATGATATTCTTTTAGATGCT
GTTTGGTTGATGTGGCCCCCGATGACTTTTCCCGTGCTTTCTCTCTGCAG
GCTGCCCCAAGTATCCATTTCTGCTAATGATCTATTGCTTCTGTCTGATT
CAGTGCAGCCCACTGGCTATGGAAATGGCAAGTCTCAGCGGGAGACAACA
AAATGTTCAGCATACAGGGCTGAGCCATGTCATTTTCCTCACATACTTTC
CTAGGAATGAAATGACCAGC

CCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTGTGCAGGATATGGTTCCTGAATGA
GTAGTGGATGCTTAGGAACATGCAGGCATTCCCTATAGTGTCTTCCTTAT
GAAGTGCCTATCTATGTCGCTTCTAATCAAATCTTACATGCTACCTTAGT
GTGAAACAGCAGTGTGGATCCAGGTTGTAGACACATAACATTTAATGCCC
TGAAGTCACCTTGCCTGAAGGAGTCCAAACCTACTGAAGTGAGCAGTGGT
CAGTTAAAAACAGTGACTATCCTGATTGTAATGGTCTGACCAGTGTGTCG
TACTCAGCCTTGTTTTGACTTCCCTCAGGGTCTGAGCTGGTATTTTATCA
AGCCTGTCCTGTCCAGCGTTCTGTGATTATTGTAATGCTTCACACTGTGT
ATGATTTATGGAGGTGACTCCGTTGTCTTGGGCAGGGATACAAGGAGCCT
GCTACTCACTGAGTGGAAGTACATTCTATCCACAGGCAGTAGCTTACAGA
TTATGGTCTGGGCAAAGCATCGTTTTGTATTTTTTGAATGGAAATCATTT
GTGTTATAGGTGTGCATGTGCTCATGCTAGGGTGCGTGTGTAGAGGTCAG
AGGACAGCTTTTAGGAGTTGTTTCTCTACTTTCACCATCCGGATAAAGGA
CTCATATCCATTTACCAAATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no233_p13.b1 MSMg01no233_p13.b1 CHROMAT_FILE:
MSMg01no233_p13.b1 PHD_FILE: MSMg01no233_p13.b1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:48 2005
         (318 letters)



>mm_chr12_54754155_54754872
          Length = 718

 Score =  592 bits (306), Expect = e-173
 Identities = 312/314 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattcatgaataccaaaaaccatgggctctcattggcagaacatgccctttccacacta 64
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 518 gaattcatgaataccaaaaaccatgggctctcattggcagaacatgccctttccacacta 459

                                                                       
Query: 65  ccctccccattacaatagtctagaagaatccaagatacaagtccaaggatcatggaaata 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 458 ccctccccattacaatagtctagaagaatccaagatacaagtccaaggatcatggaaata 399

                                                                       
Query: 125 caatctgaaaatgcagatactgattgaaataagaataatataatattctggtctgaatta 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 398 caatctgaaaatgcagatactgattgaaataagaataatataatattctggtctgaatta 339

                                                                       
Query: 185 gtgctatgtcttagagatataaggtcaatggaggtgtaaggagaaaaataagaccagaat 244
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 338 gtgctatgtcttagagatctaaggtcaatggaggtgtaaggagaaaaataagaccagaat 279

                                                                       
Query: 245 ttaaaaaaatgaaatagatttttaagcagttgttttcaacacaagaaaaagcatacagaa 304
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 278 tttaaaaaatgaaatagatttttaagcagttgttttcaacacaagaaaaagcatacagaa 219

                         
Query: 305 accaatgtacctct 318
           ||||||||||||||
Sbjct: 218 accaatgtacctct 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 318
Length of database: 718
Length adjustment: 9
Effective length of query: 309
Effective length of database: 709
Effective search space:   219081
Effective search space used:   219081
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no233_p13.g1 MSMg01no233_p13.g1 CHROMAT_FILE:
MSMg01no233_p13.g1 PHD_FILE: MSMg01no233_p13.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:50:48 2005
         (296 letters)



>mm_chr12_54588954_54589649
          Length = 696

 Score =  557 bits (288), Expect = e-163
 Identities = 294/296 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgtgcaggatatggttcctgaatgagtagtggatgcttaggaacatgcaggcattcccta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tgtgcaggatatggttcctgaatgagtagtggatgcttaggaacatgcaggcattcccta 260

                                                                       
Query: 61  tagtgtcttccttatgaagtgcctatctatgtcgcttctaatcaaatcttacatgctacc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tagtgtcttccttatgaagtgcctatctatgtcgcttctaatcaaatcttacatgctacc 320

                                                                       
Query: 121 ttagtgtgaaacagcagtgtggatccaggttgtagacacataacatttaatgccctgaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttagtgtgaaacagcagtgtggatccaggttgtagacacataacatttaatgccctgaag 380

                                                                       
Query: 181 tcaccttgcctgaaggagtccaaacctactgaagtgagcagtggtcagttaaaaacagtg 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tcaccttgcctgaaggagtccaaacctactgaagtgagcagtggtcagttaaaaacagtg 440

                                                                   
Query: 241 actatcctgattgtaatggtctgaccagtgtgtcgtactcagccttgttttgactt 296
           |||||||||||||||||||||||||||||||||||||||||||| || ||||||||
Sbjct: 441 actatcctgattgtaatggtctgaccagtgtgtcgtactcagccatgctttgactt 496


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 296
Length of database: 696
Length adjustment: 9
Effective length of query: 287
Effective length of database: 687
Effective search space:   197169
Effective search space used:   197169
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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