BAC Information

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BAC

Clone NameMSMg01-234E06
Chromosome12 (Build37)
Map Location 58,389,674 - 58,389,957
singlet/doubletsinglet
Overlap genenone
Upstream geneMbip, EG621837, E030019B13Rik, Titf1, LOC100039993, Nkx2-9, Pax9, Slc25a21, AU021838
Downstream geneLOC100040044, Foxa1, 4921506M07Rik, EG217600, BC042761, Sstr1, Clec14a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234E06.T7 (MSMg01no234_e06.b1)MSMg01-234E06.TJ (MSMg01no234_e06.g1)
ACCAG400211AG400212
length727723
length of high quality
(start - end)
234 (130 - 363)286 (77 - 362)
definitionCHROMAT_FILE: MSMg01no234_e06.b1 PHD_FILE: MSMg01no234_e06.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:12 2005CHROMAT_FILE: MSMg01no234_e06.g1 PHD_FILE: MSMg01no234_e06.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:12 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCTCACCTGATGCCCACCAAATGGCAGAGAAGCACCTGAAAAAATGT
TCAACATCCTTAATCATCATTGCACCTGCAAATCAAAACAACCCTGAGAT
TCCACCTCACACCAGTCAGAATGGCTAAGATAAAAAATTCAGGTGACAGC
AGATGCTGGCAAGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTG
GGATTGCAGGCTTGTACAACCACTCTGGAAATCCGTCTGGCGGTTCCTCA
GAAAATTGGACATAGTACTACCGGTATTATCCAGCAATACCTCTCCTGGG
CATATATCCAGAATATGTCTCAACCGGCAACAACGACACATGCTCCACTA
TGTTCATAGCAGCCTTATTTATAACAGCCAGAAGCTGGAAAGAACCCAGA
TGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAAT
GGAGTACTACTCAGCTATTAAAAAGAATGAATTTATGAAATTCCTAGCCA
AATGGATGGACCTGGAGGGCATCATCCTGAGTGAGGTAACACATTCACAA
AGGAACTCACACAATATGTACTCACTGATAAGTGGATATTAGCCCAAAAC
CTAGGATACCCAAGATATAAGATACAATTTGCTAAACACATGAAACTCAA
GAAGAATGATTACTGATGTGTGCACAC
TCGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXTATATGGACAATTAAAACCCCAAC
TGATTTAAAGTGCTTTTCAATTTTGAGGAAAGAAGAAAGAGAAGGAGATA
TTGAGAGAGGGAGGCAGATACTCCTATTCTCTCAAAAGTTCCCCTCACGG
AGAATTTAGGGTAGGTTGGGGGTTATAACCAACACTCCACCGTGGCCAGC
ATGTCTGTAGTGAAAGGGATTGTGCATCTGTGGAAACAGGAGGTAGATGG
GAACACTGTGACATTCTCTCAGTTTATGTGGGATCTTAAACAAATGAAGC
TAATAAGAACATTTTGTATTTACCCCCCCCCCCCCCGAACCTACTACAAA
CTCATCTACATGACATATTCATATCAAAAATGATGCCTGTATAGTCAGTC
CATACTAAATGTCATAACCAGTTAAAACTGTTACCCTATACAAATATTTT
ATACAGAATTCCATTCTTCCACTGAGGCACAAGTAATAACAGAATTATTC
ATACTAAACTTTAAAAATAAAGAAACACAGAATCTTATTAAACATACTAA
AATAAATTATATTTTAGAAAACCTACACTCTATATCACTGCTTTAAGGCA
GTGCTCAACCTACTTGATGCCGCGACCATTTAACACAGTTCCCCATGTTG
TGGTGATCCACATCATAAAATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_e06.g1 MSMg01no234_e06.g1 CHROMAT_FILE:
MSMg01no234_e06.g1 PHD_FILE: MSMg01no234_e06.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:12 2005
         (286 letters)



>mm_chr12_58389474_58390158
          Length = 685

 Score =  505 bits (261), Expect = e-147
 Identities = 279/285 (97%), Gaps = 1/285 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatatggacaattaaaaccccaactgatttaaagtgcttttcaattttgaggaaagaaga 60
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 484 tatatggacaattaaaaccccaactgatttaaagtgcttttcaattttgaagaaagaaga 425

                                                                       
Query: 61  aagagaaggagatattgagagagggaggcagatactcctattctctcaaaagttcccctc 120
           |||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 424 aagagagggagatattgagagagggaggcagatactcctattctctcaagagttcccctc 365

                                                                       
Query: 121 acggagaatttagggtaggttgggggttataaccaacactccaccgtggccagcatgtct 180
           ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 364 acggagaatttagggtaggtt-ggggttataaccaacactccaccgtggccagcatgtct 306

                                                                       
Query: 181 gtagtgaaagggattgtgcatctgtggaaacaggaggtagatgggaacactgtgacattc 240
           |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 305 gtagtgaaagggattgtgcatctgtggagacaggaggtagatgggaacactgtgacattc 246

                                                        
Query: 241 tctcagtttatgtgggatcttaaacaaatgaagctaataagaaca 285
           |||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 245 tctcagtttaggtgggatcttaaacaaatgaagctaataagaaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 10
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 286
Length of database: 685
Length adjustment: 9
Effective length of query: 277
Effective length of database: 676
Effective search space:   187252
Effective search space used:   187252
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)