BAC Information

Click to search

BAC

Clone NameMSMg01-234E24
Chromosome12 (Build37)
Map Location 53,410,749 - 53,411,010
singlet/doubletsinglet
Overlap genenone
Upstream gene6030408C04Rik, Scfd1, LOC620390, LOC100039578, Coch, Strn3, Ap4s1, Hectd1, EG544864, LOC100039476, Heatr5a, LOC676784, 6530401N04Rik, Gpr33, LOC100039627, Nubpl
Downstream geneArhgap5, Akap6, Npas3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-234E24.T7 (MSMg01no234_e24.b1)MSMg01-234E24.TJ (MSMg01no234_e24.g1)
ACCAG400244AG400245
length744742
length of high quality
(start - end)
667 (75 - 741)289 (76 - 364)
definitionCHROMAT_FILE: MSMg01no234_e24.b1 PHD_FILE: MSMg01no234_e24.b1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:15 2005CHROMAT_FILE: MSMg01no234_e24.g1 PHD_FILE: MSMg01no234_e24.g1.phd.1 CHEM: term DYE: big TIME: Tue May 17 20:51:15 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGG
AATTCACTAACTGATGTCCAATACCAAGGTTTATAATAGCTTTTGGTTTC
TTTATTTTATTTTTTTAAATTTTAACCGAAAGTAGATTCTGCTCTCATAT
AATACATATTGACCACCGTTTCCCCTGCTTCCACTCCTCCCAACTCTCCT
TCACCTCCCCTCTCCTCTAGATCCATTCTCTTTCCTGTTTCCTCTTCAGA
AAAGATCAGGCCTCCAAGAGATAATAGCAAAATACAACAAAGCAAGGTAT
GGTAAGGCAAGATAAGGTAACCTGATATTAGGAAGAGTCCCAAGAACAGG
CAAGAGAGTGAGAGATATATCTGCTCCTACTGCTAGAAGTCCCCCACAAA
ACCAAAAGAAAACAAAAACAAGCTACCAGCCATAAACATGCTCAGAGGGC
CTGGTGCAGACCCTTGCAGGCCTTGTGCTTGCTGCTTCAGTCTCCGTGAG
TCTGTGTGTTCCCTGCTTGGTTGATTTGGTATGCCATGTTCTCCTGGTGT
TTTCCATCCCCTTCCTGTCTTCTGAGGGGTTCTCTGACCTCCAAGGGGAG
GGACCTCATATTTAAACACTCTCTCTGCATAATGTCTGGCACCTGCTACC
ATTTGCTGCCAGAGGAAGTCTCTCTGATGACTACTGGACAAGGCTCTGCT
CTATGAGTATAGCAGAATAGCAGTAGGAATCATTTTGTCTGTCN
CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTCTTAAACAAATGCAATAGTCACCA
CCAAGCTTACCCATAAATTATGAAACCATTCTTTTTTTTTTTTTTTTTTT
GAGGCAGGGTTTCACCATGTACTCTATACTAACCCTACATTTATTTATTT
ATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTATTTTT
ACTGGCTTTGAAATATTTATTTTTTTTTCCATTTTTTATTAGGTATTTAG
CTCATTTACATTTCCAATGCTATACCAAAAGTCCCCCATACCCACCCACC
CCCACTCCCCTGCCCATTTTTTTTCCCCCTTGCGGAACCGCGTTCCCTTG
TATTGGTGAATATAAAGTTTGCCCCCCCAAAGAAAAACAATTTCCAGGGG
GGGGGGACTAGGCCATCTTTTGATATATATGTACCTAGAGCCAAGAGCTC
CGGGGTACTGGTTAGTTCATAATGGTGCCCCATCTATAGGGTTGCAGATC
CCTTTATCTCCTTGGCTACTTTCTCTAGCTCCTCCATTGGGAGCCCTGTG
ATCCATCCATTAGCTGACTGTGAGCATCCTCTTCTGTGTTTGCTATGCCC
CGGCATATTCTCTCATGACAACGCTATTTTGGGTTCCTTTCAATAAAATC
TTGCCAGTGTACGCACTGTTTGCTACTTTTGCATTGTTGATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no234_e24.g1 MSMg01no234_e24.g1 CHROMAT_FILE:
MSMg01no234_e24.g1 PHD_FILE: MSMg01no234_e24.g1.phd.1 CHEM: term DYE:
big TIME: Tue May 17 20:51:15 2005
         (289 letters)



>mm_chr12_53410701_53411386
          Length = 686

 Score =  395 bits (204), Expect = e-114
 Identities = 255/294 (86%), Gaps = 37/294 (12%)
 Strand = Plus / Minus

                                                                       
Query: 1   tcttaaacaaatgcaatagtcaccaccaagcttacccataaattatgaaaccattctttt 60
           |||||||||||||||||||||||||||||||||||||| ||||||||||||||   ||||
Sbjct: 310 tcttaaacaaatgcaatagtcaccaccaagcttacccaaaaattatgaaacca---tttt 254

                                                                       
Query: 61  tttttttttttttttgaggcagggtttcaccatgtactctatactaaccctacatttatt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 253 tttttttttttttttgaggcagggtttcaccatgtactctatactaaccctacatttatt 194

                                                                       
Query: 121 tatttatttatttatttatttatttatttatttatttatttatttatttatttttactgg 180
           ||||||||||||||||||||||||||                            ||||| 
Sbjct: 193 tatttatttatttatttatttattta----------------------------tactgt 162

                                                                       
Query: 181 ctttgaaata-----tttatttttttttccattttttattaggtatttagctcatttaca 235
           ||||||||||     |||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 161 ctttgaaatatttattttatttttttttcca-tttttattaggtatttagctcatttaca 103

                                                                 
Query: 236 tttccaatgctataccaaaagtcccccatacccacccacccccactcccctgcc 289
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 102 tttccaatgctataccaaaagtcccccatacccacccacccccactcccctgcc 49


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 40
Number of extensions: 12
Number of successful extensions: 12
Number of sequences better than 10.0: 1
Number of HSP's gapped: 6
Number of HSP's successfully gapped: 1
Length of query: 289
Length of database: 686
Length adjustment: 9
Effective length of query: 280
Effective length of database: 677
Effective search space:   189560
Effective search space used:   189560
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)